Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22665	Hdac5	histone deacetylase 5	11		15184
Gene Ontology	chromatin modification | cytoplasm | histone deacetylase activity | hydrolase activity | negative regulation of transcription from Pol II promoter | nucleus | protein binding | regulation of transcription, DNA-dependent | transcription corepressor activity | transcriptional repressor activity
Human Homolog	HDAC5[histone deacetylase 5]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGATTCTGC 8.2 0.0082 P8 Cb GC GAGCAGGAGC (3) 6.5 0.0065 P8 Cb GC GGGGTGACAG (3) 4.9 0.0049 P8 Cb GC CAGCAGCAGC (3) 1.6 0.0016 P8 Cb GC GGCTTCTCTG (7) 1.6 0.0016 Cb medulloblastoma GAGCAGGAGC (3) 27.7 0.0277 Cb medulloblastoma GGGGTGACAG (3) 11.6 0.0116 Cb medulloblastoma GCGCTAACAG (3) 4.6 0.0046 Cb medulloblastoma GGGATTCTGC 4.6 0.0046 Cb medulloblastoma GGCTCCTCTG (4) 2.3 0.0023 Cb medulloblastoma GGGCTCAAGG (5) 2.3 0.0023 P8 GC+1d culture GAGCAGGAGC (3) 11.4 0.0114 P8 GC+1d culture GGGGTGACAG (3) 6.8 0.0068 P8 GC+1d culture GGGATTCTGC 3.4 0.0034 P8 GC+SHH+1d culture GAGCAGGAGC (3) 19.9 0.0199 P8 GC+SHH+1d culture GGGATTCTGC 4.7 0.0047 P8 GC+SHH+1d culture GGGGTGACAG (3) 4.7 0.0047 P8 GC+SHH+1d culture GCGCTCACAG 1.2 0.0012 P8 GC+SHH+1d culture GGGCTCAAGG (5) 1.2 0.0012 3T3 fibroblasts AGGACGGTGG (4) 3.5 0.0035 3T3 fibroblasts GAGCAGGAGC (3) 3.5 0.0035 E15 cortex GAGCAGGAGC (3) 34.6 0.0346 E15 cortex AGGACGGTGG (4) 9.9 0.0099 E15 cortex GCGCTAACAG (3) 9.9 0.0099 E15 cortex GGGGTGACAG (3) 9.9 0.0099 E15 cortex GGGATTCTGC 4.9 0.0049 P1 cortex GCGCTAACAG (3) 13.6 0.0136 P1 cortex GCCTCCCTCC (3) 4.5 0.0045 Hypothalamus GAGCAGGAGC (3) 18.1 0.0181 Hypothalamus GGGGTGACAG (3) 7.2 0.0072 Hypothalamus GCGCTAACAG (3) 5.4 0.0054 Hypothalamus CAGCAGCAGC (3) 3.6 0.0036 Hypothalamus GCCCTGCTTT (3) 1.8 0.0018 Hypothalamus GGCTCCTCTG (4) 1.8 0.0018 Hypothalamus GGGTCCTCTG (8) 1.8 0.0018 E12.5 retina GAGCAGGAGC (3) 13.1 0.0131 E12.5 retina GCGCTAACAG (3) 5.6 0.0056 E12.5 retina GGGGTGACAG (3) 1.9 0.0019 E14.5 retina GAGCAGGAGC (3) 9.1 0.0091 E14.5 retina GGGGTGACAG (3) 5.5 0.0055 E14.5 retina GGCTCCTCTG (4) 3.6 0.0036 E14.5 retina GCGCTAACAG (3) 1.8 0.0018 E14.5 retina GCGCTCACAG 1.8 0.0018 E16.5 retina GAGCAGGAGC (3) 27.2 0.0272 E16.5 retina GAGCTCACAA (3) 1.8 0.0018 E16.5 retina GCCTCCCTCC (3) 1.8 0.0018 E16.5 retina GCGCTAACAG (3) 1.8 0.0018 E16.5 retina GGCTCCTCTG (4) 1.8 0.0018 E16.5 retina GGGCTCAAGG (5) 1.8 0.0018 E16.5 retina GGGGGTGGAG (6) 1.8 0.0018 E16.5 retina GGGGTGACAG (3) 1.8 0.0018 E18.5 retina GAGCAGGAGC (3) 10.9 0.0109 E18.5 retina GGGGTGACAG (3) 9.1 0.0091 E18.5 retina GCGCTAACAG (3) 5.5 0.0055 E18.5 retina GCCTCCCTCC (3) 3.6 0.0036 E18.5 retina GCGCTCACAG 1.8 0.0018 E18.5 retina GGCTTCTCTG (7) 1.8 0.0018 E18.5 retina GGGATTCTGC 1.8 0.0018 P0.5 retina GAGCAGGAGC (3) 21.6 0.0216 P0.5 retina GGGGTGACAG (3) 3.9 0.0039 P0.5 retina GGGATTCTGC 2 0.002 P0.5 retina GGGTCCTCTG (8) 2 0.002 P2.5 retina GAGCAGGAGC (3) 15.8 0.0158 P2.5 retina GGGGTGACAG (3) 7 0.007 P2.5 retina GGGATTCTGC 3.5 0.0035 P2.5 retina GCGCTAACAG (3) 1.8 0.0018 P4.5 retina GAGCAGGAGC (3) 29.7 0.0297 P4.5 retina GCGCTAACAG (3) 5.9 0.0059 P4.5 retina GGGTCCTCTG (8) 4 0.004 P4.5 retina GCCCTGCTTT (3) 2 0.002 P4.5 retina GGGATTCTGC 2 0.002 P6.5 retina GAGCAGGAGC (3) 38.3 0.0383 P6.5 retina GGGTCCTCTG (8) 3.3 0.0033 P6.5 retina AGGACGGTGG (4) 1.7 0.0017 P6.5 retina GCGCTAACAG (3) 1.7 0.0017 P6.5 retina GCGCTCACAG 1.7 0.0017 P6.5 retina GGGGTGACAG (3) 1.7 0.0017 P10.5 crx- retina GAGCAGGAGC (3) 35.3 0.0353 P10.5 crx- retina GCGCTAACAG (3) 11.1 0.0111 P10.5 crx- retina GGGGTGACAG (3) 5.6 0.0056 P10.5 crx- retina GGGATTCTGC 1.9 0.0019 P10.5 crx+ retina GAGCAGGAGC (3) 34.6 0.0346 P10.5 crx+ retina GCGCTAACAG (3) 9.6 0.0096 P10.5 crx+ retina GGGGTGACAG (3) 5.8 0.0058 P10.5 crx+ retina GAGCTCACAA (3) 3.8 0.0038 P10.5 crx+ retina GCCCTGCTTT (3) 1.9 0.0019 P10.5 crx+ retina GCGCTCACAG 1.9 0.0019 P10.5 crx+ retina GGGGGTGGAG (6) 1.9 0.0019 Adult retinal GAGCAGGAGC (3) 25.9 0.0259 Adult retinal GCGCTAACAG (3) 7.4 0.0074 Adult retinal GGGGTGACAG (3) 3.7 0.0037 Adult retinal GGCTCCTCTG (4) 1.9 0.0019 Adult retinal GGGATTCTGC 1.9 0.0019 Adult retinal GGGGGTGGAG (6) 1.9 0.0019 Adult retinal GGGTCCTCTG (8) 1.9 0.0019 ONL GAGCAGGAGC (3) 13.4 0.0134 ONL GCGCTAACAG (3) 1.9 0.0019 ONL GGGCTCAAGG (5) 1.9 0.0019 ONL GGGGTGACAG (3) 1.9 0.0019