Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.22668	Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	4	4 65.6 cM	15356
Gene Ontology	catalytic activity | extracellular space | hydroxymethylglutaryl-CoA lyase activity | lyase activity | mitochondrion
Human Homolog	HMGCL[3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 49 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC ATTCCGAATT (107) 1.6 0.0016 P8 Cb GC CCTGATGGCT (2) 1.6 0.0016 Cb medulloblastoma GGGATGAGGG (2) 4.6 0.0046 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture CTGAAAGGGC (2) 2.3 0.0023 P8 GC+1d culture CTGAATGGCT (2) 1.1 0.0011 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture CTGAATGGCT (2) 4.7 0.0047 3T3 fibroblasts CTGAATGGCT (2) 3.5 0.0035 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus GGGATGAGGG (2) 5.4 0.0054 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina CTGAAAGGGC (2) 3.8 0.0038 E12.5 retina CCTGATGGCT (2) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina AAAGGCTTTG (5) 3.6 0.0036 E14.5 retina GGGATGAGGG (2) 1.8 0.0018 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina GGGATGAGGG (2) 3.6 0.0036 E16.5 retina AAAGGCTTTG (5) 1.8 0.0018 E16.5 retina CCTGATGGCT (2) 1.8 0.0018 E16.5 retina CTGAAAGGGC (2) 1.8 0.0018 E16.5 retina CTGAATGGCT (2) 1.8 0.0018 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GGGATGAGGG (2) 1.8 0.0018 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina CTGAAAGGGC (2) 2 0.002 P0.5 retina CTGAATGGCT (2) 2 0.002 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina AAAGGCTTTG (5) 1.8 0.0018 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CTGAAAGGGC (2) 4 0.004 P4.5 retina ATTCCGAATT (107) 2 0.002 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina ATTCCGAATT (107) 3.3 0.0033 P6.5 retina CTGAAAGGGC (2) 1.7 0.0017 P10.5 crx- retina CTGAAAGGGC (2) 1.9 0.0019 P10.5 crx+ retina AAGTGCCTGT (4) 3.8 0.0038 P10.5 crx+ retina ATAAGGGCTA 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal AAGTGCCTGT (4) 1.9 0.0019 Adult retinal CTGAATGGCT (2) 1.9 0.0019 ONL ATTCCGAATT (107) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038