Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.234965
9130401L11Rik
RIKEN cDNA 9130401L11 gene
6
74555
Mm.234965
Foxp1
forkhead box P1
6
108655
Mm.234965
6030492E11Rik
RIKEN cDNA 6030492E11 gene
6
77726
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 88 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
TGGGTTGTCT (
7
)
577.5
0.5775
P8 Cb GC
GAGTGAACCT
(
3
)
4.9
0.0049
P8 Cb GC
GAAGAGTCCT (
5
)
3.3
0.0033
P8 Cb GC
ACCTTCCATT (
4
)
1.6
0.0016
P8 Cb GC
AGCGCATTCT
(
3
)
1.6
0.0016
P8 Cb GC
GGGACTGTTA
(
4
)
1.6
0.0016
P8 Cb GC
TCATCCAATG
(
5
)
1.6
0.0016
P8 Cb GC
TTGATAATGG
(
3
)
1.6
0.0016
P8 Cb GC
TTTCTCTCAA
(
3
)
1.6
0.0016
Cb medulloblastoma
TGGGTTGTCT (
7
)
235.9
0.2359
P8 GC+1d culture
TGGGTTGTCT (
7
)
537.7
0.5377
P8 GC+1d culture
AATAACCACA
(
3
)
1.1
0.0011
P8 GC+1d culture
ACCGGCCTGG (
5
)
1.1
0.0011
P8 GC+1d culture
ACCTTCCATT (
4
)
1.1
0.0011
P8 GC+1d culture
AGCGCATTCT
(
3
)
1.1
0.0011
P8 GC+1d culture
CTTAGTCTAA
(
3
)
1.1
0.0011
P8 GC+1d culture
GAGTGAACCT
(
3
)
1.1
0.0011
P8 GC+SHH+1d culture
TGGGTTGTCT (
7
)
530.4
0.5304
P8 GC+SHH+1d culture
AATAACCACA
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
AGCGCATTCT
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GAGTGAACCT
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
GTGATGTCTA
(
5
)
1.2
0.0012
P8 GC+SHH+1d culture
TCAAAACATA (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TTTCTCTCAA
(
3
)
1.2
0.0012
3T3 fibroblasts
TGGGTTGTCT (
7
)
147.2
0.1472
3T3 fibroblasts
GAAGAGTCCT (
5
)
7
0.007
3T3 fibroblasts
ACCGGCCTGG (
5
)
3.5
0.0035
3T3 fibroblasts
GAGTGAACCT
(
3
)
3.5
0.0035
3T3 fibroblasts
GTAAAGAAGC (
10
)
3.5
0.0035
E15 cortex
TGGGTTGTCT (
7
)
272.1
0.2721
E15 cortex
CTTAGTCTAA
(
3
)
4.9
0.0049
P1 cortex
TGGGTTGTCT (
7
)
290.9
0.2909
P1 cortex
TCATCCAATG
(
5
)
9.1
0.0091
P1 cortex
AATAACCACA
(
3
)
4.5
0.0045
P1 cortex
AGCGCATTCT
(
3
)
4.5
0.0045
P1 cortex
GAGTGAACCT
(
3
)
4.5
0.0045
P1 cortex
GTAAAGAAGC (
10
)
4.5
0.0045
P1 cortex
TTTCTCTCAA
(
3
)
4.5
0.0045
Hypothalamus
TGGGTTGTCT (
7
)
382.2
0.3822
Hypothalamus
TCAAAACATA (
4
)
7.2
0.0072
Hypothalamus
ACCGGCCTGG (
5
)
3.6
0.0036
E12.5 retina
TGGGTTGTCT (
7
)
963.1
0.9631
E12.5 retina
AGCGCATTCT
(
3
)
3.8
0.0038
E12.5 retina
GAAGAGTCCT (
5
)
3.8
0.0038
E12.5 retina
GGGACTGTTA
(
4
)
3.8
0.0038
E12.5 retina
AACCACCACA (
12
)
1.9
0.0019
E12.5 retina
GTGATGTCTA
(
5
)
1.9
0.0019
E12.5 retina
TTGATAATGG
(
3
)
1.9
0.0019
E12.5 retina
TTTCTCTCAA
(
3
)
1.9
0.0019
E14.5 retina
TGGGTTGTCT (
7
)
1189.8
1.1898
E14.5 retina
GAGTGAACCT
(
3
)
5.5
0.0055
E14.5 retina
AGCGCATTCT
(
3
)
3.6
0.0036
E14.5 retina
GAAGAGTCCT (
5
)
1.8
0.0018
E14.5 retina
GTGATGTCTA
(
5
)
1.8
0.0018
E16.5 retina
TGGGTTGTCT (
7
)
1233.4
1.2334
E16.5 retina
CTTAGTCTAA
(
3
)
3.6
0.0036
E16.5 retina
GAGTGAACCT
(
3
)
3.6
0.0036
E16.5 retina
GAAGAGTCCT (
5
)
1.8
0.0018
E18.5 retina
TGGGTTGTCT (
7
)
1758.9
1.7589
E18.5 retina
AACCACCACA (
12
)
1.8
0.0018
E18.5 retina
ACCTTCCATT (
4
)
1.8
0.0018
E18.5 retina
AGCGCATTCT
(
3
)
1.8
0.0018
E18.5 retina
GAAGAGTCCT (
5
)
1.8
0.0018
E18.5 retina
TCAAAACATA (
4
)
1.8
0.0018
E18.5 retina
TTTCTCTCAA
(
3
)
1.8
0.0018
P0.5 retina
TGGGTTGTCT (
7
)
724.2
0.7242
P0.5 retina
AACCACCACA (
12
)
2
0.002
P0.5 retina
AGCGCATTCT
(
3
)
2
0.002
P0.5 retina
GGGACTGTTA
(
4
)
2
0.002
P2.5 retina
TGGGTTGTCT (
7
)
712.7
0.7127
P2.5 retina
GAAGAGTCCT (
5
)
7
0.007
P2.5 retina
AACCACCACA (
12
)
1.8
0.0018
P2.5 retina
AGCGCATTCT
(
3
)
1.8
0.0018
P2.5 retina
GTAAAGAAGC (
10
)
1.8
0.0018
P4.5 retina
TGGGTTGTCT (
7
)
754.9
0.7549
P4.5 retina
TTGATAATGG
(
3
)
4
0.004
P6.5 retina
TGGGTTGTCT (
7
)
360.1
0.3601
P6.5 retina
AGCGCATTCT
(
3
)
1.7
0.0017
P6.5 retina
TCAAAACATA (
4
)
1.7
0.0017
P6.5 retina
TTGATAATGG
(
3
)
1.7
0.0017
P10.5 crx- retina
TGGGTTGTCT (
7
)
209.9
0.2099
P10.5 crx- retina
AATAACCACA
(
3
)
1.9
0.0019
P10.5 crx- retina
GAAGAGTCCT (
5
)
1.9
0.0019
P10.5 crx+ retina
TGGGTTGTCT (
7
)
317.2
0.3172
P10.5 crx+ retina
TTGATAATGG
(
3
)
3.8
0.0038
Adult retinal
TGGGTTGTCT (
7
)
150
0.15
ONL
TGGGTTGTCT (
7
)
147.5
0.1475
ONL
ACCGGCCTGG (
5
)
1.9
0.0019
