Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.235960	5730416O20Rik	RIKEN cDNA 5730416O20 gene	10		70557
Mm.235960	2900006A17Rik	RIKEN cDNA 2900006A17 gene	10		72913
Mm.235960	2900054D09Rik	RIKEN cDNA 2900054D09 gene	10		73013
Mm.235960	4833431D13Rik	RIKEN cDNA 4833431D13 gene	10		268307
Mm.235960	9430064K01Rik	RIKEN cDNA 9430064K01 gene	10		77294
Mm.235960	Ank3	ankyrin 3, epithelial	10	10 38.0 cM	11735
Gene Ontology	cytoskeleton | synapse
Human Homolog	ANK3[ankyrin 3, node of Ranvier (ankyrin G)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 136 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATGAAGACT (11) 24.5 0.0245 P8 Cb GC GTTAATAAAC (6) 8.2 0.0082 P8 Cb GC TATGAGAAAA (7) 4.9 0.0049 P8 Cb GC TTGCTGCCTT (10) 3.3 0.0033 P8 Cb GC GGAGATTTTA (10) 1.6 0.0016 P8 Cb GC GTGGAAGGAG (14) 1.6 0.0016 P8 Cb GC TTAACAAAAT (11) 1.6 0.0016 P8 Cb GC TTATTAAAAA (12) 1.6 0.0016 P8 Cb GC TTCTTCAGAC (6) 1.6 0.0016 Cb medulloblastoma GATGAAGACT (11) 4.6 0.0046 Cb medulloblastoma GGAGATTTTA (10) 4.6 0.0046 Cb medulloblastoma GCATCTGTAA (8) 2.3 0.0023 Cb medulloblastoma TATGAGAAAA (7) 2.3 0.0023 P8 GC+1d culture TTGCTGCCTT (10) 14.8 0.0148 P8 GC+1d culture TATGAGAAAA (7) 12.6 0.0126 P8 GC+1d culture GATGAAGACT (11) 9.1 0.0091 P8 GC+1d culture GGAGATTTTA (10) 8 0.008 P8 GC+1d culture GTTAATAAAC (6) 4.6 0.0046 P8 GC+1d culture TTATTAAAAA (12) 4.6 0.0046 P8 GC+1d culture TTCTTCAGAC (6) 2.3 0.0023 P8 GC+1d culture ATGACCAGTA (8) 1.1 0.0011 P8 GC+1d culture CCGCCTCCCA (6) 1.1 0.0011 P8 GC+1d culture TCATTTAGAG (7) 1.1 0.0011 P8 GC+SHH+1d culture GTTAATAAAC (6) 9.4 0.0094 P8 GC+SHH+1d culture TTGCTGCCTT (10) 9.4 0.0094 P8 GC+SHH+1d culture GATGAAGACT (11) 8.2 0.0082 P8 GC+SHH+1d culture TATGAGAAAA (7) 5.9 0.0059 P8 GC+SHH+1d culture TCATTTAGAG (7) 3.5 0.0035 P8 GC+SHH+1d culture TTCTTCAGAC (6) 3.5 0.0035 P8 GC+SHH+1d culture GCATCTGTAA (8) 2.3 0.0023 P8 GC+SHH+1d culture TTATTAAAAA (12) 2.3 0.0023 P8 GC+SHH+1d culture ATGACCAGTA (8) 1.2 0.0012 P8 GC+SHH+1d culture GCAACTCACA (7) 1.2 0.0012 P8 GC+SHH+1d culture GGAGATTTTA (10) 1.2 0.0012 P8 GC+SHH+1d culture TGGCTGCCCA (10) 1.2 0.0012 3T3 fibroblasts GATGAAGACT (11) 10.5 0.0105 3T3 fibroblasts TTGCTGCCTT (10) 7 0.007 3T3 fibroblasts TTCTTCAGAC (6) 3.5 0.0035 E15 cortex GATGAAGACT (11) 19.8 0.0198 E15 cortex GGAGATTTTA (10) 14.8 0.0148 E15 cortex TTGCTGCCTT (10) 9.9 0.0099 P1 cortex GGAGATTTTA (10) 13.6 0.0136 P1 cortex GATGAAGACT (11) 4.5 0.0045 P1 cortex GTGGAAGGAG (14) 4.5 0.0045 P1 cortex GTTAATAAAC (6) 4.5 0.0045 P1 cortex TGGCTGCCCA (10) 4.5 0.0045 P1 cortex TTCTTCAGAC (6) 4.5 0.0045 P1 cortex TTGCTGCCTT (10) 4.5 0.0045 Hypothalamus TTGCTGCCTT (10) 5.4 0.0054 Hypothalamus GTGGAAGGAG (14) 3.6 0.0036 Hypothalamus TATGAGAAAA (7) 3.6 0.0036 Hypothalamus GCATCTGTAA (8) 1.8 0.0018 Hypothalamus GGAGATTTTA (10) 1.8 0.0018 Hypothalamus GTGGGATGCT (6) 1.8 0.0018 Hypothalamus GTTAATAAAC (6) 1.8 0.0018 E12.5 retina GATGAAGACT (11) 28.2 0.0282 E12.5 retina TATGAGAAAA (7) 3.8 0.0038 E12.5 retina TTGCTGCCTT (10) 3.8 0.0038 E12.5 retina ATGACCAGTA (8) 1.9 0.0019 E12.5 retina GCAACTCACA (7) 1.9 0.0019 E12.5 retina GTGGGATGCT (6) 1.9 0.0019 E12.5 retina TGGCTGCCCA (10) 1.9 0.0019 E14.5 retina GAAAATGAAA (11) 10.9 0.0109 E14.5 retina TTGCTGCCTT (10) 10.9 0.0109 E14.5 retina GATGAAGACT (11) 5.5 0.0055 E14.5 retina GTGGAAGGAG (14) 5.5 0.0055 E14.5 retina TATGAGAAAA (7) 3.6 0.0036 E14.5 retina TTATTAAAAA (12) 3.6 0.0036 E14.5 retina ATGTCTGTGT (10) 1.8 0.0018 E14.5 retina CCGCCTCCCA (6) 1.8 0.0018 E14.5 retina GCATCTGTAA (8) 1.8 0.0018 E14.5 retina GGAGATTTTA (10) 1.8 0.0018 E14.5 retina GTTAATAAAC (6) 1.8 0.0018 E16.5 retina TTGCTGCCTT (10) 12.7 0.0127 E16.5 retina GATGAAGACT (11) 10.9 0.0109 E16.5 retina TATGAGAAAA (7) 5.4 0.0054 E16.5 retina ATGTCTGTGT (10) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina CCGCCTCCCA (6) 1.8 0.0018 E16.5 retina GCAACTCACA (7) 1.8 0.0018 E16.5 retina GTGGAAGGAG (14) 1.8 0.0018 E16.5 retina GTGGGATGCT (6) 1.8 0.0018 E16.5 retina GTTAATAAAC (6) 1.8 0.0018 E16.5 retina TCATTTAGAG (7) 1.8 0.0018 E16.5 retina TTATTAAAAA (12) 1.8 0.0018 E18.5 retina TTGCTGCCTT (10) 9.1 0.0091 E18.5 retina GTTAATAAAC (6) 7.3 0.0073 E18.5 retina GATGAAGACT (11) 5.5 0.0055 E18.5 retina TATGAGAAAA (7) 3.6 0.0036 E18.5 retina TTCTTCAGAC (6) 3.6 0.0036 E18.5 retina GCATCTGTAA (8) 1.8 0.0018 E18.5 retina GTGGGATGCT (6) 1.8 0.0018 P0.5 retina GATGAAGACT (11) 17.7 0.0177 P0.5 retina TTGCTGCCTT (10) 3.9 0.0039 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina CCTTTATCTT (6) 2 0.002 P0.5 retina TATGAGAAAA (7) 2 0.002 P2.5 retina GATGAAGACT (11) 14.1 0.0141 P2.5 retina TTGCTGCCTT (10) 10.6 0.0106 P2.5 retina GTTAATAAAC (6) 8.8 0.0088 P2.5 retina TATGAGAAAA (7) 7 0.007 P2.5 retina TTCTTCAGAC (6) 3.5 0.0035 P2.5 retina ATGACCAGTA (8) 1.8 0.0018 P4.5 retina TTGCTGCCTT (10) 21.8 0.0218 P4.5 retina GTTAATAAAC (6) 9.9 0.0099 P4.5 retina GATGAAGACT (11) 5.9 0.0059 P4.5 retina GAAAATGAAA (11) 2 0.002 P4.5 retina TATGAGAAAA (7) 2 0.002 P4.5 retina TTAACAAAAT (11) 2 0.002 P4.5 retina TTATTAAAAA (12) 2 0.002 P6.5 retina GATGAAGACT (11) 11.7 0.0117 P6.5 retina TTGCTGCCTT (10) 8.3 0.0083 P6.5 retina TTATTAAAAA (12) 5 0.005 P6.5 retina TATGAGAAAA (7) 3.3 0.0033 P6.5 retina GAAAATGAAA (11) 1.7 0.0017 P6.5 retina TTCTTCAGAC (6) 1.7 0.0017 P10.5 crx- retina GATGAAGACT (11) 9.3 0.0093 P10.5 crx- retina TATGAGAAAA (7) 3.7 0.0037 P10.5 crx- retina TTATTAAAAA (12) 3.7 0.0037 P10.5 crx- retina TTGCTGCCTT (10) 1.9 0.0019 P10.5 crx+ retina TTGCTGCCTT (10) 11.5 0.0115 P10.5 crx+ retina GATGAAGACT (11) 9.6 0.0096 P10.5 crx+ retina GCAACTCACA (7) 1.9 0.0019 P10.5 crx+ retina TATGAGAAAA (7) 1.9 0.0019 Adult retinal GATGAAGACT (11) 20.4 0.0204 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal TTGCTGCCTT (10) 3.7 0.0037 Adult retinal GCAACTCACA (7) 1.9 0.0019 Adult retinal GTGGAAGGAG (14) 1.9 0.0019 ONL GATGAAGACT (11) 7.7 0.0077 ONL TTGCTGCCTT (10) 7.7 0.0077 ONL CCTTTATCTT (6) 3.8 0.0038 ONL GCAACTCACA (7) 1.9 0.0019 ONL GTGGAAGGAG (14) 1.9 0.0019 ONL TATGAGAAAA (7) 1.9 0.0019 ONL TTATTAAAAA (12) 1.9 0.0019