Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.245446
E130112L15Rik
RIKEN cDNA E130112L15 gene
1
77858
Mm.245446
1810043M20Rik
RIKEN cDNA 1810043M20 gene
1
226562
Human Homolog
XTP2[HBxAg transactivated protein 2]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 69 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CACACACACA (
106
)
11.4
0.0114
P8 Cb GC
AAGAAAAAAA (
27
)
9.8
0.0098
P8 Cb GC
GGCCAGTTCT (
6
)
1.6
0.0016
Cb medulloblastoma
CACACACACA (
106
)
32.4
0.0324
Cb medulloblastoma
GGCCAGTTCT (
6
)
18.5
0.0185
Cb medulloblastoma
AAGAAAAAAA (
27
)
11.6
0.0116
Cb medulloblastoma
AAGAAGAAAA (
14
)
2.3
0.0023
P8 GC+1d culture
GGCCAGTTCT (
6
)
8
0.008
P8 GC+1d culture
CACACACACA (
106
)
6.8
0.0068
P8 GC+1d culture
AAGAAAAAAA (
27
)
4.6
0.0046
P8 GC+1d culture
AAGAAGAAAA (
14
)
1.1
0.0011
P8 GC+1d culture
GTGATTTGGT
(
2
)
1.1
0.0011
P8 GC+SHH+1d culture
CACACACACA (
106
)
9.4
0.0094
P8 GC+SHH+1d culture
AAGAAAAAAA (
27
)
3.5
0.0035
P8 GC+SHH+1d culture
GAGAGAATGA
(
2
)
3.5
0.0035
P8 GC+SHH+1d culture
GGCCAGTTCT (
6
)
3.5
0.0035
P8 GC+SHH+1d culture
GTGATTTGGT
(
2
)
1.2
0.0012
3T3 fibroblasts
CACACACACA (
106
)
17.5
0.0175
3T3 fibroblasts
GGCCAGTTCT (
6
)
3.5
0.0035
E15 cortex
AAGAAAAAAA (
27
)
24.7
0.0247
E15 cortex
CACACACACA (
106
)
4.9
0.0049
P1 cortex
CACACACACA (
106
)
27.3
0.0273
P1 cortex
AAGAAAAAAA (
27
)
9.1
0.0091
P1 cortex
AAGAAGACAA (
3
)
9.1
0.0091
Hypothalamus
CACACACACA (
106
)
96
0.096
Hypothalamus
AAGAAAAAAA (
27
)
1.8
0.0018
Hypothalamus
GGCCAGTTCT (
6
)
1.8
0.0018
E12.5 retina
CACACACACA (
106
)
3.8
0.0038
E12.5 retina
AAGAAAAAAA (
27
)
1.9
0.0019
E12.5 retina
AAGAAGACAA (
3
)
1.9
0.0019
E12.5 retina
GGCCAGTTCT (
6
)
1.9
0.0019
E14.5 retina
CACACACACA (
106
)
18.2
0.0182
E14.5 retina
AAGAAAAAAA (
27
)
1.8
0.0018
E14.5 retina
AAGAAGACAA (
3
)
1.8
0.0018
E14.5 retina
GGCCAGTTCT (
6
)
1.8
0.0018
E14.5 retina
GTGATTTGGT
(
2
)
1.8
0.0018
E16.5 retina
CACACACACA (
106
)
12.7
0.0127
E16.5 retina
AAGAAAAAAA (
27
)
1.8
0.0018
E16.5 retina
AAGAAGAAAA (
14
)
1.8
0.0018
E18.5 retina
AAGAAAAAAA (
27
)
5.5
0.0055
E18.5 retina
CACACACACA (
106
)
5.5
0.0055
E18.5 retina
GTGATTTGGT
(
2
)
3.6
0.0036
E18.5 retina
GAGAGAATGA
(
2
)
1.8
0.0018
E18.5 retina
GGCCAGTTCT (
6
)
1.8
0.0018
P0.5 retina
CACACACACA (
106
)
7.9
0.0079
P0.5 retina
AAGAAAAAAA (
27
)
2
0.002
P0.5 retina
GAGAGAATGA
(
2
)
2
0.002
P2.5 retina
CACACACACA (
106
)
21.1
0.0211
P2.5 retina
AAGAAAAAAA (
27
)
5.3
0.0053
P4.5 retina
CACACACACA (
106
)
7.9
0.0079
P4.5 retina
AAGAAAAAAA (
27
)
5.9
0.0059
P6.5 retina
CACACACACA (
106
)
8.3
0.0083
P6.5 retina
AAGAAAAAAA (
27
)
3.3
0.0033
P6.5 retina
GAGAGAATGA
(
2
)
1.7
0.0017
P10.5 crx- retina
CACACACACA (
106
)
5.6
0.0056
P10.5 crx- retina
GGCCAGTTCT (
6
)
3.7
0.0037
P10.5 crx- retina
AAGAAAAAAA (
27
)
1.9
0.0019
P10.5 crx- retina
AAGAAGAAAA (
14
)
1.9
0.0019
P10.5 crx+ retina
CACACACACA (
106
)
7.7
0.0077
P10.5 crx+ retina
AAGAAAAAAA (
27
)
1.9
0.0019
P10.5 crx+ retina
GAGAGAATGA
(
2
)
1.9
0.0019
P10.5 crx+ retina
GGCCAGTTCT (
6
)
1.9
0.0019
Adult retinal
CACACACACA (
106
)
16.7
0.0167
Adult retinal
AAGAAAAAAA (
27
)
1.9
0.0019
ONL
CACACACACA (
106
)
21.1
0.0211
ONL
AAGAAAAAAA (
27
)
3.8
0.0038
ONL
AAGAAGAAAA (
14
)
1.9
0.0019
ONL
GGCCAGTTCT (
6
)
1.9
0.0019
ONL
GTGATTTGGT
(
2
)
1.9
0.0019
