Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.246863
Prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast)
7
68988
Human Homolog
PRPF31[PRP31 pre-mRNA processing factor 31 homolog (yeast)]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 100 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
GGAAGATGCT
(
3
)
65.3
0.0653
P8 Cb GC
CTAGACACCT (
3
)
4.9
0.0049
P8 Cb GC
CTGCTGCTTC
(
4
)
4.9
0.0049
P8 Cb GC
CATATTGTAC
(
2
)
1.6
0.0016
P8 Cb GC
GGTGTGGCTG (
5
)
1.6
0.0016
Cb medulloblastoma
GGAAGATGCT
(
3
)
97.1
0.0971
Cb medulloblastoma
CTAGACACCT (
3
)
9.2
0.0092
Cb medulloblastoma
GACCCAGCTC
(
3
)
4.6
0.0046
P8 GC+1d culture
GGAAGATGCT
(
3
)
50.2
0.0502
P8 GC+1d culture
CTAGACACCT (
3
)
45.7
0.0457
P8 GC+1d culture
CTGCTGCTTC
(
4
)
3.4
0.0034
P8 GC+1d culture
CATATTGTAC
(
2
)
1.1
0.0011
P8 GC+1d culture
CTGTGCTCCT (
4
)
1.1
0.0011
P8 GC+SHH+1d culture
GGAAGATGCT
(
3
)
71.4
0.0714
P8 GC+SHH+1d culture
CTAGACACCT (
3
)
30.4
0.0304
P8 GC+SHH+1d culture
CTGCTGCTTC
(
4
)
4.7
0.0047
P8 GC+SHH+1d culture
CATATTGTAC
(
2
)
1.2
0.0012
P8 GC+SHH+1d culture
GACCCAGCTC
(
3
)
1.2
0.0012
P8 GC+SHH+1d culture
TGCATCTCTG (
4
)
1.2
0.0012
3T3 fibroblasts
CTGCTGCTTC
(
4
)
14
0.014
3T3 fibroblasts
GACCCAGCTC
(
3
)
3.5
0.0035
3T3 fibroblasts
GGAACCTTGG
(
5
)
3.5
0.0035
E15 cortex
GGAAGATGCT
(
3
)
9.9
0.0099
E15 cortex
CTAGACACCT (
3
)
4.9
0.0049
E15 cortex
GACCCAGCTC
(
3
)
4.9
0.0049
E15 cortex
GGTGTGGCTG (
5
)
4.9
0.0049
P1 cortex
GGAAGATGCT
(
3
)
36.4
0.0364
P1 cortex
CTAGACACCT (
3
)
4.5
0.0045
P1 cortex
CTGCTGCTTC
(
4
)
4.5
0.0045
Hypothalamus
GGAAGATGCT
(
3
)
123.2
0.1232
Hypothalamus
CTGTGCTCCT (
4
)
7.2
0.0072
Hypothalamus
CTAGACACCT (
3
)
3.6
0.0036
Hypothalamus
GACCCAGCTC
(
3
)
3.6
0.0036
Hypothalamus
CATATTGTAC
(
2
)
1.8
0.0018
Hypothalamus
TTAACTGAAG (
9
)
1.8
0.0018
E12.5 retina
GGAAGATGCT
(
3
)
39.4
0.0394
E12.5 retina
CTGCTGCTTC
(
4
)
11.3
0.0113
E12.5 retina
GGAACCTTGG
(
5
)
3.8
0.0038
E12.5 retina
CTAGACACCT (
3
)
1.9
0.0019
E12.5 retina
GACCCAGCTC
(
3
)
1.9
0.0019
E14.5 retina
GGAAGATGCT
(
3
)
32.8
0.0328
E14.5 retina
CTAGACACCT (
3
)
3.6
0.0036
E14.5 retina
CTGCTGCTTC
(
4
)
3.6
0.0036
E14.5 retina
CATATTGTAC
(
2
)
1.8
0.0018
E14.5 retina
GGAACCTTGG
(
5
)
1.8
0.0018
E14.5 retina
GGTGTGGCTG (
5
)
1.8
0.0018
E14.5 retina
TGCATCTCTG (
4
)
1.8
0.0018
E16.5 retina
GGAAGATGCT
(
3
)
18.1
0.0181
E16.5 retina
CTAGACACCT (
3
)
7.2
0.0072
E16.5 retina
CTGCTGCTTC
(
4
)
3.6
0.0036
E16.5 retina
CATATTGTAC
(
2
)
1.8
0.0018
E16.5 retina
GGAACCTTGG
(
5
)
1.8
0.0018
E16.5 retina
TTAACTGAAG (
9
)
1.8
0.0018
E18.5 retina
GGAAGATGCT
(
3
)
85.5
0.0855
E18.5 retina
CTGCTGCTTC
(
4
)
12.7
0.0127
E18.5 retina
CTAGACACCT (
3
)
10.9
0.0109
E18.5 retina
GACCCAGCTC
(
3
)
3.6
0.0036
E18.5 retina
CATATTGTAC
(
2
)
1.8
0.0018
E18.5 retina
CTGTGCTCCT (
4
)
1.8
0.0018
E18.5 retina
GGAACCTTGG
(
5
)
1.8
0.0018
P0.5 retina
GGAAGATGCT
(
3
)
45.1
0.0451
P0.5 retina
CTAGACACCT (
3
)
9.8
0.0098
P0.5 retina
CTGCTGCTTC
(
4
)
9.8
0.0098
P0.5 retina
GACCCAGCTC
(
3
)
5.9
0.0059
P2.5 retina
GGAAGATGCT
(
3
)
38.7
0.0387
P2.5 retina
CTAGACACCT (
3
)
10.6
0.0106
P2.5 retina
CTGCTGCTTC
(
4
)
10.6
0.0106
P2.5 retina
GACCCAGCTC
(
3
)
3.5
0.0035
P2.5 retina
CTGTGCTCCT (
4
)
1.8
0.0018
P2.5 retina
GGAACCTTGG
(
5
)
1.8
0.0018
P2.5 retina
GGTGTGGCTG (
5
)
1.8
0.0018
P4.5 retina
GGAAGATGCT
(
3
)
71.3
0.0713
P4.5 retina
CTAGACACCT (
3
)
5.9
0.0059
P4.5 retina
CTGCTGCTTC
(
4
)
4
0.004
P4.5 retina
GGAACCTTGG
(
5
)
2
0.002
P6.5 retina
GGAAGATGCT
(
3
)
36.7
0.0367
P6.5 retina
CTAGACACCT (
3
)
10
0.01
P6.5 retina
CTGCTGCTTC
(
4
)
10
0.01
P6.5 retina
GGAACCTTGG
(
5
)
3.3
0.0033
P6.5 retina
CATATTGTAC
(
2
)
1.7
0.0017
P6.5 retina
TGCATCTCTG (
4
)
1.7
0.0017
P10.5 crx- retina
GGAAGATGCT
(
3
)
37.2
0.0372
P10.5 crx- retina
CTAGACACCT (
3
)
7.4
0.0074
P10.5 crx- retina
CTGCTGCTTC
(
4
)
3.7
0.0037
P10.5 crx- retina
GACCCAGCTC
(
3
)
1.9
0.0019
P10.5 crx+ retina
GGAAGATGCT
(
3
)
65.4
0.0654
P10.5 crx+ retina
CTAGACACCT (
3
)
9.6
0.0096
P10.5 crx+ retina
CTGCTGCTTC
(
4
)
3.8
0.0038
P10.5 crx+ retina
CTGTGCTCCT (
4
)
3.8
0.0038
Adult retinal
GGAAGATGCT
(
3
)
27.8
0.0278
Adult retinal
CTAGACACCT (
3
)
9.3
0.0093
Adult retinal
CTGCTGCTTC
(
4
)
7.4
0.0074
Adult retinal
GAGAGCAGAA (
8
)
5.6
0.0056
Adult retinal
GACCCAGCTC
(
3
)
1.9
0.0019
ONL
GGAAGATGCT
(
3
)
9.6
0.0096
ONL
CTAGACACCT (
3
)
7.7
0.0077
ONL
GACCCAGCTC
(
3
)
1.9
0.0019
ONL
GGAACCTTGG
(
5
)
1.9
0.0019
ONL
TGCATCTCTG (
4
)
1.9
0.0019
ONL
TTAACTGAAG (
9
)
1.9
0.0019
