Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.247456	Tex42	testis expressed gene 42			21774
Mm.247456	Nfx1	nuclear transcription factor, X-box binding 1	4	4 19.9 cM	74164
Gene Ontology	negative regulation of MHC class II biosynthesis | negative regulation of transcription from Pol II promoter
Human Homolog	NFX1[nuclear transcription factor, X-box binding 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 66 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCAGAAAGCA (10) 4.9 0.0049 P8 Cb GC AATACAGTAT (5) 1.6 0.0016 P8 Cb GC CATTTTGTTT (6) 1.6 0.0016 P8 Cb GC CGCCACTACC (2) 1.6 0.0016 P8 Cb GC TTCTCATTGT (2) 1.6 0.0016 P8 Cb GC TTTATTTTTT (13) 1.6 0.0016 Cb medulloblastoma AATACAGTAT (5) 4.6 0.0046 Cb medulloblastoma CATTTTGTTT (6) 2.3 0.0023 P8 GC+1d culture TTTATTTTTT (13) 3.4 0.0034 P8 GC+1d culture CATTTTGTTT (6) 2.3 0.0023 P8 GC+1d culture GCAGAAAGCA (10) 2.3 0.0023 P8 GC+1d culture GCGGAAAGCA (2) 2.3 0.0023 P8 GC+1d culture CGCCACTACC (2) 1.1 0.0011 P8 GC+1d culture TGTTTGAAGA (3) 1.1 0.0011 P8 GC+SHH+1d culture CATTTTGTTT (6) 4.7 0.0047 P8 GC+SHH+1d culture TTTATTTTTT (13) 4.7 0.0047 P8 GC+SHH+1d culture GCAGAAAGCA (10) 2.3 0.0023 P8 GC+SHH+1d culture AATACAGTAT (5) 1.2 0.0012 Hypothalamus CGCCACTACC (2) 3.6 0.0036 Hypothalamus GCAGAAAGCA (10) 1.8 0.0018 Hypothalamus TGTTTGAAGA (3) 1.8 0.0018 E12.5 retina CATTTTGTTT (6) 7.5 0.0075 E12.5 retina GCAGAAAGCA (10) 3.8 0.0038 E12.5 retina TGTTTGAAGA (3) 3.8 0.0038 E12.5 retina GCGGAAAGCA (2) 1.9 0.0019 E14.5 retina CATTTTGTTT (6) 12.8 0.0128 E14.5 retina TTTATTTTTT (13) 3.6 0.0036 E16.5 retina CATTTTGTTT (6) 3.6 0.0036 E16.5 retina CGCCACTACC (2) 1.8 0.0018 E16.5 retina GCAGAAAGCA (10) 1.8 0.0018 E16.5 retina TTCTCATTGT (2) 1.8 0.0018 E18.5 retina CATTTTGTTT (6) 7.3 0.0073 E18.5 retina GCAGAAAGCA (10) 3.6 0.0036 E18.5 retina CGCCACTACC (2) 1.8 0.0018 E18.5 retina TTTATTTTTT (13) 1.8 0.0018 P0.5 retina CATTTTGTTT (6) 9.8 0.0098 P0.5 retina GTGGGCTGTG (5) 3.9 0.0039 P0.5 retina GCAGAAAGCA (10) 2 0.002 P2.5 retina CATTTTGTTT (6) 14.1 0.0141 P2.5 retina GCAGAAAGCA (10) 5.3 0.0053 P2.5 retina AATACAGTAT (5) 3.5 0.0035 P2.5 retina TTTATTTTTT (13) 3.5 0.0035 P2.5 retina GTGGGCTGTG (5) 1.8 0.0018 P4.5 retina CATTTTGTTT (6) 13.9 0.0139 P4.5 retina GCAGAAAGCA (10) 13.9 0.0139 P4.5 retina CGCCACTACC (2) 4 0.004 P4.5 retina AATACAGTAT (5) 2 0.002 P6.5 retina GCAGAAAGCA (10) 25 0.025 P6.5 retina CGCCACTACC (2) 3.3 0.0033 P6.5 retina TGTTTGAAGA (3) 3.3 0.0033 P6.5 retina CATTTTGTTT (6) 1.7 0.0017 P6.5 retina TTTATTTTTT (13) 1.7 0.0017 P10.5 crx- retina GCAGAAAGCA (10) 13 0.013 P10.5 crx- retina CGCCACTACC (2) 3.7 0.0037 P10.5 crx- retina TTTATTTTTT (13) 3.7 0.0037 P10.5 crx- retina CATTTTGTTT (6) 1.9 0.0019 P10.5 crx+ retina CATTTTGTTT (6) 7.7 0.0077 P10.5 crx+ retina TGTTTGAAGA (3) 3.8 0.0038 P10.5 crx+ retina CGCCACTACC (2) 1.9 0.0019 P10.5 crx+ retina GCGGAAAGCA (2) 1.9 0.0019 Adult retinal CATTTTGTTT (6) 3.7 0.0037 Adult retinal CGCCACTACC (2) 1.9 0.0019 ONL GCAGAAAGCA (10) 3.8 0.0038 ONL TTTATTTTTT (13) 3.8 0.0038 ONL CATTTTGTTT (6) 1.9 0.0019 ONL TTCTCATTGT (2) 1.9 0.0019