Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.250030	Rnu65	RNA, U65 small nucleolar			104367
Mm.250030	Rpl12	ribosomal protein L12	2		269261
Gene Ontology	cytoplasm | cytosolic ribosome (sensu Eukarya) | intracellular | nucleolus | nucleus | protein binding | protein biosynthesis | ribonucleoprotein complex | ribosome | ribosome biogenesis | RNA binding | structural constituent of ribosome
Human Homolog	RPL12[ribosomal protein L12]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 153 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC ACATCATAGA (3) 70.1 0.0701 P8 Cb GC AGGGTGGCGG (5) 6.5 0.0065 P8 Cb GC ACATCATCGA (3) 4.9 0.0049 P8 Cb GC ACATCATAGG (2) 1.6 0.0016 P8 Cb GC AGCAGTGGTG (7) 1.6 0.0016 P8 Cb GC CCGCCCAAGT (2) 1.6 0.0016 P8 Cb GC GAAGTGGAAG (8) 1.6 0.0016 P8 Cb GC GTGGAGGCGG (4) 1.6 0.0016 P8 Cb GC TACCATCAAC (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma ACATCATAGA (3) 20.8 0.0208 Cb medulloblastoma AGCAGTGGTG (7) 4.6 0.0046 Cb medulloblastoma AGGGTGGCGG (5) 4.6 0.0046 Cb medulloblastoma TGAGCAGTGG (3) 4.6 0.0046 Cb medulloblastoma ATGACATCAC (7) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture ACATCATAGA (3) 41.1 0.0411 P8 GC+1d culture ACATCATCGA (3) 2.3 0.0023 P8 GC+1d culture ACATCATAGG (2) 1.1 0.0011 P8 GC+1d culture AGGGTGGCGG (5) 1.1 0.0011 P8 GC+1d culture GTGGAGGCGG (4) 1.1 0.0011 P8 GC+1d culture TACCATCAAC (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture ACATCATAGA (3) 52.7 0.0527 P8 GC+SHH+1d culture AAGGTGGGGG (8) 1.2 0.0012 P8 GC+SHH+1d culture AGCAGTGGTG (7) 1.2 0.0012 P8 GC+SHH+1d culture AGGGTGGCGG (5) 1.2 0.0012 P8 GC+SHH+1d culture CCGCCCAAGT (2) 1.2 0.0012 P8 GC+SHH+1d culture CCTTATTGCG (2) 1.2 0.0012 P8 GC+SHH+1d culture GAAGTGGAAG (8) 1.2 0.0012 P8 GC+SHH+1d culture GTGGAGGCGG (4) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts GAAGTGGAAG (8) 21 0.021 3T3 fibroblasts ACATCATAGA (3) 14 0.014 3T3 fibroblasts AGGGTGGCGG (5) 14 0.014 3T3 fibroblasts GTGGAGGCGG (4) 14 0.014 3T3 fibroblasts CCGCCCAAGT (2) 7 0.007 3T3 fibroblasts AGCAGTGGTG (7) 3.5 0.0035 3T3 fibroblasts TACCATCAAC (5) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex ACATCATAGA (3) 14.8 0.0148 E15 cortex CCGCCCAAGT (2) 9.9 0.0099 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex ACATCATAGA (3) 59.1 0.0591 P1 cortex CCGCCCAAGT (2) 9.1 0.0091 P1 cortex TACCATCAAC (5) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus ACATCATAGA (3) 52.5 0.0525 Hypothalamus ACTTCATAGA (4) 1.8 0.0018 Hypothalamus AGCAGTGGTG (7) 1.8 0.0018 Hypothalamus AGGGTGGCGG (5) 1.8 0.0018 Hypothalamus GAAGTGGAAG (8) 1.8 0.0018 Hypothalamus GTGGAGGCGG (4) 1.8 0.0018 Hypothalamus TGAGCAGTGG (3) 1.8 0.0018 E12.5 retina ACATCATAGA (3) 178.3 0.1783 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina GTGGAGGCGG (4) 9.4 0.0094 E12.5 retina GAAGTGGAAG (8) 3.8 0.0038 E12.5 retina TACCATCAAC (5) 3.8 0.0038 E12.5 retina ACATCATAGG (2) 1.9 0.0019 E12.5 retina ACGTCATAGA (3) 1.9 0.0019 E12.5 retina AGCAGTGGTG (7) 1.9 0.0019 E12.5 retina GACATCATAG (3) 1.9 0.0019 E12.5 retina GGAGTGCCCA (3) 1.9 0.0019 E14.5 retina ACATCATAGA (3) 109.3 0.1093 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGGGTGGCGG (5) 18.2 0.0182 E14.5 retina AAGGGGTTGG (4) 3.6 0.0036 E14.5 retina ACATCATAGG (2) 1.8 0.0018 E14.5 retina ACTTCATAGA (4) 1.8 0.0018 E14.5 retina GACATCATAG (3) 1.8 0.0018 E14.5 retina GTGGAGGCGG (4) 1.8 0.0018 E16.5 retina ACATCATAGA (3) 103.2 0.1032 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina AGGGTGGCGG (5) 9.1 0.0091 E16.5 retina TACCATCAAC (5) 3.6 0.0036 E16.5 retina ACATCATAGG (2) 1.8 0.0018 E16.5 retina ATGACATCAC (7) 1.8 0.0018 E16.5 retina GACATCATAG (3) 1.8 0.0018 E16.5 retina GGAGTGCCCA (3) 1.8 0.0018 E16.5 retina GTGGAGGCGG (4) 1.8 0.0018 E16.5 retina TGAGCAGTGG (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina ACATCATAGA (3) 72.8 0.0728 E18.5 retina AGGGTGGCGG (5) 9.1 0.0091 E18.5 retina TACCATCAAC (5) 5.5 0.0055 E18.5 retina ACGTCATAGA (3) 3.6 0.0036 E18.5 retina GAAGTGGAAG (8) 3.6 0.0036 E18.5 retina ACTTCATAGA (4) 1.8 0.0018 E18.5 retina ATGACATCAC (7) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina ACATCATAGA (3) 55 0.055 P0.5 retina GTGGAGGCGG (4) 7.9 0.0079 P0.5 retina GAAGTGGAAG (8) 5.9 0.0059 P0.5 retina TACCATCAAC (5) 3.9 0.0039 P0.5 retina ACATCATAGG (2) 2 0.002 P0.5 retina AGGGTGGCGG (5) 2 0.002 P0.5 retina CCGCCCAAGT (2) 2 0.002 P0.5 retina CCTTATTGCG (2) 2 0.002 P0.5 retina GGAGTGCCCA (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina ACATCATAGA (3) 44 0.044 P2.5 retina AGCAGTGGTG (7) 5.3 0.0053 P2.5 retina AAGGTGGGGG (8) 1.8 0.0018 P2.5 retina AGGGTGGCGG (5) 1.8 0.0018 P2.5 retina CCGCCCAAGT (2) 1.8 0.0018 P2.5 retina GAAGTGGAAG (8) 1.8 0.0018 P2.5 retina TACCATCAAC (5) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina ACATCATAGA (3) 59.4 0.0594 P4.5 retina ACTTCATAGA (4) 5.9 0.0059 P4.5 retina AGGGTGGCGG (5) 2 0.002 P4.5 retina GGAGTGCCCA (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina ACATCATAGA (3) 31.7 0.0317 P6.5 retina GAAGTGGAAG (8) 11.7 0.0117 P6.5 retina ATCTCAAAAA (3) 3.3 0.0033 P6.5 retina AGCAGTGGTG (7) 1.7 0.0017 P6.5 retina CCTTATTGCG (2) 1.7 0.0017 P6.5 retina GACATCATAG (3) 1.7 0.0017 P6.5 retina GTGGAGGCGG (4) 1.7 0.0017 P6.5 retina TACCATCAAC (5) 1.7 0.0017 P6.5 retina TGAGCAGTGG (3) 1.7 0.0017 P10.5 crx- retina ACATCATAGA (3) 72.5 0.0725 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina GAAGTGGAAG (8) 14.9 0.0149 P10.5 crx- retina AGGGTGGCGG (5) 3.7 0.0037 P10.5 crx- retina AGCAGTGGTG (7) 1.9 0.0019 P10.5 crx- retina ATGACATCAC (7) 1.9 0.0019 P10.5 crx- retina TGAGCAGTGG (3) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina ACATCATAGA (3) 42.3 0.0423 P10.5 crx+ retina GAAGTGGAAG (8) 9.6 0.0096 P10.5 crx+ retina AGCAGTGGTG (7) 5.8 0.0058 P10.5 crx+ retina AGGGTGGCGG (5) 3.8 0.0038 P10.5 crx+ retina ACTTCATAGA (4) 1.9 0.0019 P10.5 crx+ retina ATGACATCAC (7) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal GAAGTGGAAG (8) 37 0.037 Adult retinal ACATCATAGA (3) 9.3 0.0093 Adult retinal AGCAGTGGTG (7) 5.6 0.0056 Adult retinal TGAGCAGTGG (3) 3.7 0.0037 Adult retinal ATGACATCAC (7) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GAAGTGGAAG (8) 44.1 0.0441 ONL ACATCATAGA (3) 15.3 0.0153 ONL AGCAGTGGTG (7) 5.7 0.0057 ONL AAGGGGTTGG (4) 1.9 0.0019 ONL AAGGTGGGGG (8) 1.9 0.0019 ONL ACTTCATAGA (4) 1.9 0.0019 ONL GACATCATAG (3) 1.9 0.0019 ONL TGAGCAGTGG (3) 1.9 0.0019