Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.250425
1700001O11Rik
RIKEN cDNA 1700001O11 gene
8
78318
Mm.250425
2310065K24Rik
RIKEN cDNA 2310065K24 gene
8
102122
Gene Ontology
nucleus
Human Homolog
NIP30[NEFA-interacting nuclear protein NIP30]
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 64 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
ACCATCCTCT
(
2
)
3.3
0.0033
P8 Cb GC
TACACACACA (
29
)
1.6
0.0016
P8 Cb GC
TCCATCCTCT (
7
)
1.6
0.0016
P8 Cb GC
TTGTGTGTGG (
6
)
1.6
0.0016
Cb medulloblastoma
TGACATTTTA
(
7
)
4.6
0.0046
Cb medulloblastoma
ACCATCCTCT
(
2
)
2.3
0.0023
Cb medulloblastoma
TACACACACA (
29
)
2.3
0.0023
Cb medulloblastoma
TCCATCCTCT (
7
)
2.3
0.0023
P8 GC+1d culture
ACCATCCTCT
(
2
)
6.8
0.0068
P8 GC+1d culture
TCACCAGCTG
(
4
)
1.1
0.0011
P8 GC+1d culture
TCCATCCTCT (
7
)
1.1
0.0011
P8 GC+SHH+1d culture
ACCATCCTCT
(
2
)
8.2
0.0082
P8 GC+SHH+1d culture
TCCATCCTCT (
7
)
3.5
0.0035
P8 GC+SHH+1d culture
TAACCAGCAG (
4
)
1.2
0.0012
P8 GC+SHH+1d culture
TCCTCCCCTC
(
6
)
1.2
0.0012
P8 GC+SHH+1d culture
TTGTGTGTGG (
6
)
1.2
0.0012
E15 cortex
TCCATCCTCT (
7
)
4.9
0.0049
P1 cortex
ACCATCCTCT
(
2
)
4.5
0.0045
Hypothalamus
TACACACACA (
29
)
7.2
0.0072
Hypothalamus
ACCATCCTCT
(
2
)
5.4
0.0054
E12.5 retina
ACCATCCTCT
(
2
)
7.5
0.0075
E12.5 retina
TACACACACA (
29
)
1.9
0.0019
E12.5 retina
TCCTCCCCTC
(
6
)
1.9
0.0019
E14.5 retina
ACCATCCTCT
(
2
)
10.9
0.0109
E14.5 retina
TACACACACA (
29
)
5.5
0.0055
E14.5 retina
TCCTCCCCTC
(
6
)
1.8
0.0018
E14.5 retina
TTGTGTGTGG (
6
)
1.8
0.0018
E16.5 retina
ACCATCCTCT
(
2
)
5.4
0.0054
E16.5 retina
TACACACACA (
29
)
3.6
0.0036
E16.5 retina
TAACCAGCAG (
4
)
1.8
0.0018
E16.5 retina
TCACCAGCTG
(
4
)
1.8
0.0018
E18.5 retina
ACCATCCTCT
(
2
)
1.8
0.0018
E18.5 retina
TACACACACA (
29
)
1.8
0.0018
E18.5 retina
TCACCAGCTG
(
4
)
1.8
0.0018
P0.5 retina
ACCATCCTCT
(
2
)
9.8
0.0098
P0.5 retina
TACACACACA (
29
)
5.9
0.0059
P0.5 retina
TAACCAGCAG (
4
)
3.9
0.0039
P0.5 retina
TCCTCCCCTC
(
6
)
2
0.002
P2.5 retina
ACCATCCTCT
(
2
)
10.6
0.0106
P4.5 retina
ACCATCCTCT
(
2
)
7.9
0.0079
P4.5 retina
TACACACACA (
29
)
4
0.004
P4.5 retina
TCACCAGCTG
(
4
)
2
0.002
P4.5 retina
TCCATCCTCT (
7
)
2
0.002
P4.5 retina
TGACATTTTA
(
7
)
2
0.002
P6.5 retina
ACCATCCTCT
(
2
)
8.3
0.0083
P6.5 retina
TACACACACA (
29
)
3.3
0.0033
P6.5 retina
TCCATCCTCT (
7
)
1.7
0.0017
P6.5 retina
TTGTGTGTGG (
6
)
1.7
0.0017
P10.5 crx- retina
ACCATCCTCT
(
2
)
5.6
0.0056
P10.5 crx- retina
TTGTGTGTGG (
6
)
5.6
0.0056
P10.5 crx- retina
TACACACACA (
29
)
3.7
0.0037
P10.5 crx- retina
TCCTCCCCTC
(
6
)
1.9
0.0019
P10.5 crx+ retina
ACCATCCTCT
(
2
)
15.4
0.0154
P10.5 crx+ retina
TACACACACA (
29
)
1.9
0.0019
P10.5 crx+ retina
TGACATTTTA
(
7
)
1.9
0.0019
P10.5 crx+ retina
TTGTGTGTGG (
6
)
1.9
0.0019
Adult retinal
TTGTGTGTGG (
6
)
7.4
0.0074
Adult retinal
TACACACACA (
29
)
5.6
0.0056
Adult retinal
TAACCAGCAG (
4
)
3.7
0.0037
Adult retinal
ACCATCCTCT
(
2
)
1.9
0.0019
ONL
TACACACACA (
29
)
13.4
0.0134
ONL
TTGTGTGTGG (
6
)
5.7
0.0057
ONL
ACCATCCTCT
(
2
)
3.8
0.0038
ONL
TAACCAGCAG (
4
)
1.9
0.0019
