Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.25059	D13Ertd787e	DNA segment, Chr 13, ERATO Doi 787, expressed	13	13 29.0 cM	52680
Mm.25059	D13Ertd42e	DNA segment, Chr 13, ERATO Doi 42, expressed	13	13 29.0 cM	52475
Mm.25059	AU018574	expressed sequence AU018574	13		105273
Mm.25059	A930104B17Rik	RIKEN cDNA A930104B17 gene	13		319835
Mm.25059	Jarid2	jumonji, AT rich interactive domain 2	13	13 27.0 cM	16468
Gene Ontology	development | DNA binding | intracellular | nucleus
Human Homolog	JARID2[Jumonji, AT rich interactive domain 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGGGAAACA (12) 19.6 0.0196 P8 Cb GC TTTTAACAAA (9) 8.2 0.0082 P8 Cb GC AAGAGAAAAA (19) 3.3 0.0033 P8 Cb GC TATAAGTGCT (6) 3.3 0.0033 P8 Cb GC TGCGAAGGGA (6) 3.3 0.0033 P8 Cb GC GCTGTGAAAT (11) 1.6 0.0016 P8 Cb GC TTCTCTGGAA (12) 1.6 0.0016 Cb medulloblastoma GGGGGAAACA (12) 16.2 0.0162 Cb medulloblastoma TTTTAACAAA (9) 9.2 0.0092 Cb medulloblastoma AAGAGAAAAA (19) 2.3 0.0023 Cb medulloblastoma GATGACAGGG (5) 2.3 0.0023 Cb medulloblastoma TATAAGTGCT (6) 2.3 0.0023 Cb medulloblastoma TTCTCTGGAA (12) 2.3 0.0023 P8 GC+1d culture GGGGGAAACA (12) 8 0.008 P8 GC+1d culture TATAAGTGCT (6) 8 0.008 P8 GC+1d culture TTTTAACAAA (9) 4.6 0.0046 P8 GC+1d culture ACAGAAGAAA (9) 3.4 0.0034 P8 GC+1d culture TATAAGTGTA (6) 3.4 0.0034 P8 GC+1d culture AAGAGAAAAA (19) 2.3 0.0023 P8 GC+1d culture GCTGAGAAAT (9) 2.3 0.0023 P8 GC+1d culture TGCGAAGGGA (6) 2.3 0.0023 P8 GC+1d culture GATGACAGGG (5) 1.1 0.0011 P8 GC+1d culture GCTGTGAAAT (11) 1.1 0.0011 P8 GC+1d culture TATAAGTGTT (6) 1.1 0.0011 P8 GC+1d culture TCACAAGAGA (6) 1.1 0.0011 P8 GC+SHH+1d culture GGGGGAAACA (12) 8.2 0.0082 P8 GC+SHH+1d culture TTTTAACAAA (9) 8.2 0.0082 P8 GC+SHH+1d culture AAGAGAAAAA (19) 3.5 0.0035 P8 GC+SHH+1d culture TATAAGTGCT (6) 3.5 0.0035 P8 GC+SHH+1d culture GCTGAGAAAT (9) 2.3 0.0023 P8 GC+SHH+1d culture AATTTAAAGC (7) 1.2 0.0012 P8 GC+SHH+1d culture ACAGAAGAAA (9) 1.2 0.0012 P8 GC+SHH+1d culture GATGACAGGG (5) 1.2 0.0012 P8 GC+SHH+1d culture GCAAGACAGA (13) 1.2 0.0012 P8 GC+SHH+1d culture GCGATGGAGA (5) 1.2 0.0012 P8 GC+SHH+1d culture GCTGAGAAAA (15) 1.2 0.0012 P8 GC+SHH+1d culture TCACAAGAGA (6) 1.2 0.0012 E15 cortex GGGGGAAACA (12) 9.9 0.0099 E15 cortex ACAGAAGAAA (9) 4.9 0.0049 E15 cortex TTCTCTGGAA (12) 4.9 0.0049 P1 cortex TTTTAACAAA (9) 13.6 0.0136 P1 cortex ACAGAAGAAA (9) 4.5 0.0045 P1 cortex GCTGTGAAAT (11) 4.5 0.0045 P1 cortex GGGGGAAACA (12) 4.5 0.0045 Hypothalamus GGGGGAAACA (12) 5.4 0.0054 Hypothalamus GCTGAGAAAA (15) 1.8 0.0018 Hypothalamus TATAAGTGTA (6) 1.8 0.0018 Hypothalamus TATAAGTGTT (6) 1.8 0.0018 Hypothalamus TTTTAACAAA (9) 1.8 0.0018 E12.5 retina GGGGGAAACA (12) 9.4 0.0094 E12.5 retina TTTTAACAAA (9) 7.5 0.0075 E12.5 retina GCGATGGAGA (5) 1.9 0.0019 E12.5 retina TATAAGTGTA (6) 1.9 0.0019 E12.5 retina TGCGAAGGGA (6) 1.9 0.0019 E14.5 retina GGGGGAAACA (12) 9.1 0.0091 E14.5 retina TTTTAACAAA (9) 5.5 0.0055 E14.5 retina TATAAGTGTA (6) 1.8 0.0018 E14.5 retina TCACAAGAGA (6) 1.8 0.0018 E14.5 retina TGCGAAGGGA (6) 1.8 0.0018 E14.5 retina TTCTCTGGAA (12) 1.8 0.0018 E16.5 retina GGGGGAAACA (12) 16.3 0.0163 E16.5 retina TTTTAACAAA (9) 10.9 0.0109 E16.5 retina AAGAGAAAAA (19) 1.8 0.0018 E16.5 retina ACAGAAGAAA (9) 1.8 0.0018 E16.5 retina GCTGTGAAAT (11) 1.8 0.0018 E18.5 retina GGGGGAAACA (12) 21.8 0.0218 E18.5 retina TTTTAACAAA (9) 5.5 0.0055 E18.5 retina AAGAGAAAAA (19) 1.8 0.0018 E18.5 retina TATAAGTGTA (6) 1.8 0.0018 E18.5 retina TGCGAAGGGA (6) 1.8 0.0018 P0.5 retina GGGGGAAACA (12) 11.8 0.0118 P0.5 retina TTTTAACAAA (9) 3.9 0.0039 P0.5 retina AATTTAAAGC (7) 2 0.002 P0.5 retina GCGATGGAGA (5) 2 0.002 P0.5 retina GCTGTGAAAT (11) 2 0.002 P0.5 retina TATAAGTGCT (6) 2 0.002 P0.5 retina TATAAGTGTA (6) 2 0.002 P0.5 retina TGCGAAGGGA (6) 2 0.002 P0.5 retina TTCTCTGGAA (12) 2 0.002 P2.5 retina GGGGGAAACA (12) 10.6 0.0106 P2.5 retina TATAAGTGCT (6) 5.3 0.0053 P2.5 retina ACAGAAGAAA (9) 1.8 0.0018 P2.5 retina TTCTCTGGAA (12) 1.8 0.0018 P2.5 retina TTTTAACAAA (9) 1.8 0.0018 P4.5 retina GGGGGAAACA (12) 17.8 0.0178 P4.5 retina AAGAGAAAAA (19) 2 0.002 P4.5 retina GCTGTGAAAT (11) 2 0.002 P4.5 retina TATAAGTGTT (6) 2 0.002 P4.5 retina TTTTAACAAA (9) 2 0.002 P6.5 retina GGGGGAAACA (12) 8.3 0.0083 P6.5 retina TATAAGTGCT (6) 3.3 0.0033 P6.5 retina ACAGAAGAAA (9) 1.7 0.0017 P6.5 retina GATGACAGGG (5) 1.7 0.0017 P6.5 retina GCTGTGAAAT (11) 1.7 0.0017 P6.5 retina TATAAGTGTA (6) 1.7 0.0017 P6.5 retina TTCTCTGGAA (12) 1.7 0.0017 P6.5 retina TTTTAACAAA (9) 1.7 0.0017 P10.5 crx- retina GGGGGAAACA (12) 14.9 0.0149 P10.5 crx- retina TTCTCTGGAA (12) 5.6 0.0056 P10.5 crx- retina TATAAGTGCT (6) 3.7 0.0037 P10.5 crx- retina AAGAGAAAAA (19) 1.9 0.0019 P10.5 crx- retina TTTTAACAAA (9) 1.9 0.0019 P10.5 crx+ retina GGGGGAAACA (12) 23.1 0.0231 P10.5 crx+ retina TTTTAACAAA (9) 5.8 0.0058 P10.5 crx+ retina GCAAGACAGA (13) 3.8 0.0038 P10.5 crx+ retina GCTGAGAAAA (15) 3.8 0.0038 P10.5 crx+ retina GATGACAGGG (5) 1.9 0.0019 P10.5 crx+ retina GCTGTGAAAT (11) 1.9 0.0019 Adult retinal GGGGGAAACA (12) 9.3 0.0093 Adult retinal TATAAGTGCT (6) 5.6 0.0056 Adult retinal GCGATGGAGA (5) 1.9 0.0019 Adult retinal GCTGAGAAAA (15) 1.9 0.0019 Adult retinal TTCTCTGGAA (12) 1.9 0.0019 ONL GGGGGAAACA (12) 7.7 0.0077 ONL TTTTAACAAA (9) 3.8 0.0038 ONL AATTTAAAGC (7) 1.9 0.0019 ONL GATGACAGGG (5) 1.9 0.0019 ONL GCTGAGAAAT (9) 1.9 0.0019 ONL TATAAGTGTT (6) 1.9 0.0019