Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.258985	D16Bwg1543e	DNA segment, Chr 16, Brigham & Women's Genetics 1543 expressed	16	16 19.6 cM	52910
Mm.258985	2610529H08Rik	RIKEN cDNA 2610529H08 gene	16		67501
Human Homolog	C3orf6[chromosome 3 open reading frame 6]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 83 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGCTGTTAAC (3) 6.5 0.0065 P8 Cb GC AAATAATGTA (4) 3.3 0.0033 P8 Cb GC CATTCCACGT (2) 3.3 0.0033 P8 Cb GC CCTATCCTAG (3) 3.3 0.0033 P8 Cb GC TTCTCATAAG (4) 3.3 0.0033 P8 Cb GC AGAGCAGCTC (4) 1.6 0.0016 Cb medulloblastoma TGCTGTTAAC (3) 6.9 0.0069 Cb medulloblastoma AAATAATGTA (4) 4.6 0.0046 Cb medulloblastoma AGAGCAGCTC (4) 2.3 0.0023 Cb medulloblastoma GCCAGAGCAC (7) 2.3 0.0023 P8 GC+1d culture TGCTGTTAAC (3) 9.1 0.0091 P8 GC+1d culture CCTATCTAGA (4) 5.7 0.0057 P8 GC+1d culture CATTCCACGT (2) 3.4 0.0034 P8 GC+1d culture TTCTCATAAG (4) 3.4 0.0034 P8 GC+1d culture AAAAATACAG (2) 1.1 0.0011 P8 GC+1d culture AAATAATGTA (4) 1.1 0.0011 P8 GC+1d culture GCCAGAGCAC (7) 1.1 0.0011 P8 GC+1d culture GTGATATGTA (3) 1.1 0.0011 P8 GC+1d culture TGGTTGAGGT (3) 1.1 0.0011 P8 GC+SHH+1d culture TGCTGTTAAC (3) 10.5 0.0105 P8 GC+SHH+1d culture CCTATCTAGA (4) 4.7 0.0047 P8 GC+SHH+1d culture CATTCCACGT (2) 3.5 0.0035 P8 GC+SHH+1d culture TTCTCATAAG (4) 2.3 0.0023 P8 GC+SHH+1d culture AAAAATACAG (2) 1.2 0.0012 P8 GC+SHH+1d culture AGAGCAGCTC (4) 1.2 0.0012 P8 GC+SHH+1d culture CCTATCCTAG (3) 1.2 0.0012 P8 GC+SHH+1d culture GTGATATGTA (3) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts AAATAATGTA (4) 3.5 0.0035 3T3 fibroblasts GCCAGAGCAC (7) 3.5 0.0035 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGCTGTTAAC (3) 4.9 0.0049 E15 cortex TTCTCATAAG (4) 4.9 0.0049 P1 cortex TTCTCATAAG (4) 4.5 0.0045 Hypothalamus AAATAATGTA (4) 3.6 0.0036 Hypothalamus TGCTGTTAAC (3) 3.6 0.0036 E12.5 retina TTCTCATAAG (4) 3.8 0.0038 E12.5 retina AAATAATGTA (4) 1.9 0.0019 E12.5 retina GTGATATGTA (3) 1.9 0.0019 E12.5 retina TTTTTAAAAG (4) 1.9 0.0019 E14.5 retina TGCTGTTAAC (3) 14.6 0.0146 E14.5 retina CCTATCCTAG (3) 3.6 0.0036 E14.5 retina AAATAATGTA (4) 1.8 0.0018 E14.5 retina TTCTCATAAG (4) 1.8 0.0018 E16.5 retina TGCTGTTAAC (3) 12.7 0.0127 E16.5 retina CCTATCCTAG (3) 1.8 0.0018 E18.5 retina TGCTGTTAAC (3) 10.9 0.0109 E18.5 retina CCTATCCTAG (3) 1.8 0.0018 P0.5 retina CCTATCCTAG (3) 7.9 0.0079 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina TGCTGTTAAC (3) 3.9 0.0039 P0.5 retina AAAAATACAG (2) 2 0.002 P0.5 retina TGGTTGAGGT (3) 2 0.002 P0.5 retina TTCTCATAAG (4) 2 0.002 P2.5 retina TGCTGTTAAC (3) 8.8 0.0088 P2.5 retina CCTATCCTAG (3) 5.3 0.0053 P2.5 retina GCCAGAGCAC (7) 3.5 0.0035 P2.5 retina CCTATCTAGA (4) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P4.5 retina TGCTGTTAAC (3) 7.9 0.0079 P4.5 retina CCTATCCTAG (3) 4 0.004 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina CCTATCCTAG (3) 8.3 0.0083 P6.5 retina CCTATCTAGA (4) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TGCTGTTAAC (3) 3.3 0.0033 P6.5 retina AAATAATGTA (4) 1.7 0.0017 P6.5 retina GCCAGAGCAC (7) 1.7 0.0017 P6.5 retina TTCTCATAAG (4) 1.7 0.0017 P10.5 crx- retina CCTATCCTAG (3) 22.3 0.0223 P10.5 crx- retina TGCTGTTAAC (3) 5.6 0.0056 P10.5 crx- retina CCTATCTAGA (4) 1.9 0.0019 P10.5 crx- retina TTTTTAAAAG (4) 1.9 0.0019 P10.5 crx+ retina CCTATCCTAG (3) 9.6 0.0096 P10.5 crx+ retina GCCAGAGCAC (7) 1.9 0.0019 P10.5 crx+ retina TGCTGTTAAC (3) 1.9 0.0019 P10.5 crx+ retina TGGTTGAGGT (3) 1.9 0.0019 Adult retinal TGCTGTTAAC (3) 7.4 0.0074 Adult retinal CCTATCCTAG (3) 3.7 0.0037 Adult retinal AAATAATGTA (4) 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL GTCATAGCTG (590) 5.7 0.0057 ONL TTTTTAAAAG (4) 1.9 0.0019