Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.259316	3632445O20Rik	RIKEN cDNA 3632445O20 gene			74029
Mm.259316	Syt11	synaptotagmin 11	3	3 42.0 cM	229521
Mm.259316	AI851970	expressed sequence AI851970	3		99745
Mm.259316	5830417I10Rik	RIKEN cDNA 5830417I10 gene	3		76022
Mm.259316	5430404N14Rik	RIKEN cDNA 5430404N14 gene	3		71329
Mm.259316	1500004A13Rik	RIKEN cDNA 1500004A13 gene	3		319830
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 119 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AACTGTGTGA (8) 8.2 0.0082 P8 Cb GC GAGAGGGTTG (7) 8.2 0.0082 P8 Cb GC GAATGTAAAT (8) 4.9 0.0049 P8 Cb GC GGTTAAAGGA (7) 3.3 0.0033 P8 Cb GC TCTAATACAA (7) 3.3 0.0033 P8 Cb GC AAAATTGTGT (8) 1.6 0.0016 P8 Cb GC GCGGGGAGAG (7) 1.6 0.0016 P8 Cb GC GTGCCATTGG (9) 1.6 0.0016 P8 Cb GC TGAATGCCTT (6) 1.6 0.0016 P8 Cb GC TTTATGGACA (7) 1.6 0.0016 Cb medulloblastoma AACTGTGTGA (8) 9.2 0.0092 Cb medulloblastoma GCGGGGAGAG (7) 6.9 0.0069 Cb medulloblastoma TCTAATACAA (7) 2.3 0.0023 Cb medulloblastoma TTTATGGACA (7) 2.3 0.0023 P8 GC+1d culture AACTGTGTGA (8) 24 0.024 P8 GC+1d culture TTTATGGACA (7) 5.7 0.0057 P8 GC+1d culture GAATGTAAAT (8) 4.6 0.0046 P8 GC+1d culture GAGAGGGTTG (7) 4.6 0.0046 P8 GC+1d culture AAAATTGTGT (8) 2.3 0.0023 P8 GC+1d culture TCTAATACAA (7) 2.3 0.0023 P8 GC+1d culture AAAAAGCCTT (10) 1.1 0.0011 P8 GC+1d culture ATGGATCAGG (8) 1.1 0.0011 P8 GC+1d culture GCTGACATCA (10) 1.1 0.0011 P8 GC+1d culture GGCTTGGAAA (7) 1.1 0.0011 P8 GC+1d culture TAAAGAAGTG (7) 1.1 0.0011 P8 GC+1d culture TTAGCTTTTT (6) 1.1 0.0011 P8 GC+SHH+1d culture AACTGTGTGA (8) 12.9 0.0129 P8 GC+SHH+1d culture TTTATGGACA (7) 10.5 0.0105 P8 GC+SHH+1d culture AAAATTGTGT (8) 9.4 0.0094 P8 GC+SHH+1d culture GAATGTAAAT (8) 8.2 0.0082 P8 GC+SHH+1d culture GAGAGGGTTG (7) 4.7 0.0047 P8 GC+SHH+1d culture TCTAATACAA (7) 3.5 0.0035 P8 GC+SHH+1d culture GGTTAAAGGA (7) 2.3 0.0023 P8 GC+SHH+1d culture GCTGACATCA (10) 1.2 0.0012 P8 GC+SHH+1d culture GGCTTGGAAA (7) 1.2 0.0012 3T3 fibroblasts GAGGCTTTGG (10) 3.5 0.0035 E15 cortex AACTGTGTGA (8) 19.8 0.0198 E15 cortex AAAATTGTGT (8) 4.9 0.0049 E15 cortex ACAAGCCTGA (10) 4.9 0.0049 E15 cortex GGTTAAAGGA (7) 4.9 0.0049 P1 cortex TTTATGGACA (7) 9.1 0.0091 P1 cortex AAAATTGTGT (8) 4.5 0.0045 P1 cortex AACTGTGTGA (8) 4.5 0.0045 Hypothalamus GAGAGGGTTG (7) 7.2 0.0072 Hypothalamus AAAATTGTGT (8) 5.4 0.0054 Hypothalamus AACTGTGTGA (8) 5.4 0.0054 Hypothalamus ATGGATCAGG (8) 5.4 0.0054 Hypothalamus TTTATGGACA (7) 5.4 0.0054 Hypothalamus ACAAGCCTGA (10) 1.8 0.0018 Hypothalamus GAATGTAAAT (8) 1.8 0.0018 Hypothalamus GAGGCTTTGG (10) 1.8 0.0018 Hypothalamus GCGGGGAGAG (7) 1.8 0.0018 Hypothalamus GGTTAAAGGA (7) 1.8 0.0018 Hypothalamus GTGCCATTGG (9) 1.8 0.0018 Hypothalamus TAAAGAAGTG (7) 1.8 0.0018 Hypothalamus TCTAATACAA (7) 1.8 0.0018 Hypothalamus TGAATGCCTT (6) 1.8 0.0018 Hypothalamus TTAGCTTTTT (6) 1.8 0.0018 E12.5 retina GGTTAAAGGA (7) 5.6 0.0056 E12.5 retina GAGAGGGTTG (7) 3.8 0.0038 E12.5 retina GAGGCTTTGG (10) 3.8 0.0038 E12.5 retina AAAAAGCCTT (10) 1.9 0.0019 E12.5 retina AAAATTGTGT (8) 1.9 0.0019 E12.5 retina AACTGTGTGA (8) 1.9 0.0019 E12.5 retina ATGGATCAGG (8) 1.9 0.0019 E12.5 retina GAATGTAAAT (8) 1.9 0.0019 E14.5 retina AACTGTGTGA (8) 5.5 0.0055 E14.5 retina GAATGTAAAT (8) 3.6 0.0036 E14.5 retina GGCTTGGAAA (7) 3.6 0.0036 E14.5 retina ATGGATCAGG (8) 1.8 0.0018 E14.5 retina GAGAGGGTTG (7) 1.8 0.0018 E14.5 retina GCGGGGAGAG (7) 1.8 0.0018 E14.5 retina GGTTAAAGGA (7) 1.8 0.0018 E14.5 retina TCTAATACAA (7) 1.8 0.0018 E14.5 retina TGAATGCCTT (6) 1.8 0.0018 E14.5 retina TTTATGGACA (7) 1.8 0.0018 E16.5 retina AACTGTGTGA (8) 7.2 0.0072 E16.5 retina TTTATGGACA (7) 3.6 0.0036 E16.5 retina AAAATTGTGT (8) 1.8 0.0018 E16.5 retina GAATGTAAAT (8) 1.8 0.0018 E16.5 retina GGTTAAAGGA (7) 1.8 0.0018 E16.5 retina TCTAATACAA (7) 1.8 0.0018 E18.5 retina AACTGTGTGA (8) 5.5 0.0055 E18.5 retina ATGGATCAGG (8) 1.8 0.0018 E18.5 retina TTTATGGACA (7) 1.8 0.0018 P0.5 retina AACTGTGTGA (8) 2 0.002 P0.5 retina GAGAGGGTTG (7) 2 0.002 P0.5 retina GGTTAAAGGA (7) 2 0.002 P0.5 retina GTGCCATTGG (9) 2 0.002 P2.5 retina GGTTAAAGGA (7) 5.3 0.0053 P2.5 retina GAATGTAAAT (8) 1.8 0.0018 P2.5 retina TAAAGAAGTG (7) 1.8 0.0018 P2.5 retina TTAGCTTTTT (6) 1.8 0.0018 P4.5 retina AACTGTGTGA (8) 5.9 0.0059 P4.5 retina GAATGTAAAT (8) 4 0.004 P4.5 retina GAGAGGGTTG (7) 4 0.004 P4.5 retina GGTTAAAGGA (7) 4 0.004 P4.5 retina ATGGATCAGG (8) 2 0.002 P4.5 retina TTAGCTTTTT (6) 2 0.002 P6.5 retina AACTGTGTGA (8) 1.7 0.0017 P6.5 retina GGTTAAAGGA (7) 1.7 0.0017 P10.5 crx- retina AACTGTGTGA (8) 24.2 0.0242 P10.5 crx- retina TTTATGGACA (7) 3.7 0.0037 P10.5 crx- retina AAAATTGTGT (8) 1.9 0.0019 P10.5 crx- retina GCTGACATCA (10) 1.9 0.0019 P10.5 crx+ retina AACTGTGTGA (8) 3.8 0.0038 P10.5 crx+ retina ATGGATCAGG (8) 1.9 0.0019 P10.5 crx+ retina GAATGTAAAT (8) 1.9 0.0019 P10.5 crx+ retina GAGAGGGTTG (7) 1.9 0.0019 P10.5 crx+ retina GAGGCTTTGG (10) 1.9 0.0019 P10.5 crx+ retina GGTTAAAGGA (7) 1.9 0.0019 P10.5 crx+ retina TTAGCTTTTT (6) 1.9 0.0019 Adult retinal AACTGTGTGA (8) 5.6 0.0056 Adult retinal ACAAGCCTGA (10) 5.6 0.0056 Adult retinal ATGGATCAGG (8) 3.7 0.0037 Adult retinal TTTATGGACA (7) 3.7 0.0037 Adult retinal GAATGTAAAT (8) 1.9 0.0019 ONL ACAAGCCTGA (10) 1.9 0.0019 ONL GGCTTGGAAA (7) 1.9 0.0019