Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.261750	B430306D02Rik	RIKEN cDNA B430306D02 gene	X	X 38.0 cM	270627
Gene Ontology	transcription factor TFIID complex
Human Homolog	TAF1[TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 66 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC TAAATGTCCT 13.1 0.0131 P8 Cb GC GAATCTCTCC 3.3 0.0033 P8 Cb GC ATGCTCTGGG (6) 1.6 0.0016 Cb medulloblastoma AGCATCAATA (2) 46.2 0.0462 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma ATGCTCTGGG (6) 6.9 0.0069 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture TAAATGTCCT 8 0.008 P8 GC+1d culture GAATCTCTCC 4.6 0.0046 P8 GC+1d culture TATGATTCAG (2) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture TAAATGTCCT 10.5 0.0105 P8 GC+SHH+1d culture TATGATTCAG (2) 3.5 0.0035 P8 GC+SHH+1d culture AGCATCAATA (2) 2.3 0.0023 P8 GC+SHH+1d culture GAATCTCTCC 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex TATGATTCAG (2) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus AGCATCAATA (2) 12.7 0.0127 Hypothalamus TAAATGTCCT 5.4 0.0054 Hypothalamus ATGCTCTGGG (6) 3.6 0.0036 Hypothalamus TATGATTCAG (2) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina TAAATGTCCT 16.9 0.0169 E12.5 retina GAATCTCTCC 1.9 0.0019 E12.5 retina TATGATTCAG (2) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina TAAATGTCCT 3.6 0.0036 E14.5 retina ATGCTCTGGG (6) 1.8 0.0018 E14.5 retina TATGATTCAG (2) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina TAAATGTCCT 12.7 0.0127 E16.5 retina TATGATTCAG (2) 3.6 0.0036 E16.5 retina GAATCTCTCC 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina TAAATGTCCT 7.3 0.0073 E18.5 retina TATGATTCAG (2) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina TAAATGTCCT 9.8 0.0098 P0.5 retina ATGCTCTGGG (6) 3.9 0.0039 P0.5 retina TATGATTCAG (2) 3.9 0.0039 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina TAAATGTCCT 17.6 0.0176 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina TAAATGTCCT 4 0.004 P4.5 retina TATGATTCAG (2) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina TAAATGTCCT 15 0.015 P6.5 retina TATGATTCAG (2) 3.3 0.0033 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina TAAATGTCCT 5.6 0.0056 P10.5 crx- retina TATGATTCAG (2) 3.7 0.0037 P10.5 crx- retina ATGCTCTGGG (6) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina TAAATGTCCT 7.7 0.0077 P10.5 crx+ retina ATGCTCTGGG (6) 3.8 0.0038 P10.5 crx+ retina TATGATTCAG (2) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal TAAATGTCCT 3.7 0.0037 Adult retinal AGCATCAATA (2) 1.9 0.0019 Adult retinal ATGCTCTGGG (6) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL TAAATGTCCT 13.4 0.0134