Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.262000	Ptp4a1	protein tyrosine phosphatase 4a1	1	1 B	19243
Gene Ontology	protein-tyrosine-phosphatase activity
Human Homolog	PTP4A1[protein tyrosine phosphatase type IVA, member 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 15 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 77 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATGGCTTAAT 22.8 0.0228 P8 Cb GC AATTGGAAAT (2) 4.9 0.0049 P8 Cb GC AATTAAAAAT (5) 3.3 0.0033 P8 Cb GC GTGTATTCCT (2) 3.3 0.0033 P8 Cb GC AAATGCTGTG (5) 1.6 0.0016 P8 Cb GC TAGAGTATGC (3) 1.6 0.0016 Cb medulloblastoma ATGGCTTAAT 9.2 0.0092 Cb medulloblastoma AATTAAAAAT (5) 2.3 0.0023 P8 GC+1d culture ATGGCTTAAT 9.1 0.0091 P8 GC+1d culture AATTGGAAAT (2) 4.6 0.0046 P8 GC+1d culture AAATGCTGTG (5) 2.3 0.0023 P8 GC+1d culture GTGTATTCCT (2) 2.3 0.0023 P8 GC+1d culture TAGAGTATGC (3) 2.3 0.0023 P8 GC+1d culture TGCCAAATAC (4) 2.3 0.0023 P8 GC+SHH+1d culture ATGGCTTAAT 19.9 0.0199 P8 GC+SHH+1d culture AAATGCTGTG (5) 3.5 0.0035 P8 GC+SHH+1d culture GTCGTCTGGT 3.5 0.0035 P8 GC+SHH+1d culture GTGTATTCCT (2) 3.5 0.0035 P8 GC+SHH+1d culture AATTAAAAAT (5) 1.2 0.0012 P8 GC+SHH+1d culture AATTGGAAAT (2) 1.2 0.0012 P8 GC+SHH+1d culture TAGAGTATGC (3) 1.2 0.0012 P8 GC+SHH+1d culture TGCCAAATAC (4) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 E15 cortex ATGGCTTAAT 9.9 0.0099 E15 cortex AATTGGAAAT (2) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGCCAAATAC (4) 4.9 0.0049 P1 cortex ATGGCTTAAT 9.1 0.0091 Hypothalamus ATGGCTTAAT 9.1 0.0091 Hypothalamus GTGTATTCCT (2) 5.4 0.0054 Hypothalamus TAATGAACTT (4) 1.8 0.0018 Hypothalamus TGCCAAATAC (4) 1.8 0.0018 E12.5 retina ATGGCTTAAT 18.8 0.0188 E12.5 retina AATTGGAAAT (2) 7.5 0.0075 E12.5 retina GTGTATTCCT (2) 1.9 0.0019 E12.5 retina TAGAGTATGC (3) 1.9 0.0019 E14.5 retina ATGGCTTAAT 10.9 0.0109 E14.5 retina TAATGAACTT (4) 1.8 0.0018 E14.5 retina TAGAGTATGC (3) 1.8 0.0018 E16.5 retina ATGGCTTAAT 14.5 0.0145 E16.5 retina AATTGGAAAT (2) 3.6 0.0036 E16.5 retina TAATGAACTT (4) 3.6 0.0036 E16.5 retina GTGTATTCCT (2) 1.8 0.0018 E18.5 retina ATGGCTTAAT 27.3 0.0273 E18.5 retina AATTGGAAAT (2) 1.8 0.0018 E18.5 retina TAGAGTATGC (3) 1.8 0.0018 E18.5 retina TGCCAAATAC (4) 1.8 0.0018 P0.5 retina ATGGCTTAAT 9.8 0.0098 P0.5 retina TAGAGTATGC (3) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina GTCGTCTGGT 2 0.002 P2.5 retina ATGGCTTAAT 37 0.037 P2.5 retina AATTGGAAAT (2) 5.3 0.0053 P2.5 retina GTGTATTCCT (2) 3.5 0.0035 P2.5 retina AAATGCTGTG (5) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TAATGAACTT (4) 1.8 0.0018 P2.5 retina TGCCAAATAC (4) 1.8 0.0018 P4.5 retina ATGGCTTAAT 17.8 0.0178 P4.5 retina GTGTATTCCT (2) 4 0.004 P4.5 retina AAATGCTGTG (5) 2 0.002 P4.5 retina AATTGGAAAT (2) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P6.5 retina ATGGCTTAAT 15 0.015 P6.5 retina AATTGGAAAT (2) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P10.5 crx- retina ATGGCTTAAT 7.4 0.0074 P10.5 crx- retina AAATGCTGTG (5) 1.9 0.0019 P10.5 crx+ retina ATGGCTTAAT 3.8 0.0038 P10.5 crx+ retina AATTGGAAAT (2) 1.9 0.0019 Adult retinal AATTGGAAAT (2) 1.9 0.0019 Adult retinal ATGGCTTAAT 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 Adult retinal TAGAGTATGC (3) 1.9 0.0019 ONL ATGGCTTAAT 5.7 0.0057 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GTGTATTCCT (2) 1.9 0.0019