Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.267377	Scd1	stearoyl-Coenzyme A desaturase 1	19	19 43.0 cM	20249
Gene Ontology	endoplasmic reticulum | fatty acid biosynthesis | integral to membrane | iron ion binding | membrane | oxidoreductase activity | stearoyl-CoA 9-desaturase activity
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 118 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GATCCCAAAT (5) 8.2 0.0082 P8 Cb GC AAAACCATTG 1.6 0.0016 P8 Cb GC CCTGCTTCCT (5) 1.6 0.0016 P8 Cb GC CTGCCCTGGG (9) 1.6 0.0016 P8 Cb GC GCGTTCCAGA (2) 1.6 0.0016 P8 Cb GC TTTGACAATG (5) 1.6 0.0016 Cb medulloblastoma CTGCCCTGGG (9) 6.9 0.0069 Cb medulloblastoma GCTGCCCTGG (12) 6.9 0.0069 Cb medulloblastoma AAAACCATTG 4.6 0.0046 Cb medulloblastoma TTTGACAATG (5) 4.6 0.0046 Cb medulloblastoma GATCCCAAAT (5) 2.3 0.0023 Cb medulloblastoma GTGTCCAGCT (5) 2.3 0.0023 P8 GC+1d culture GATCCCAAAT (5) 4.6 0.0046 P8 GC+1d culture CCCCCACAAA (3) 3.4 0.0034 P8 GC+1d culture AGAAAATGCT (4) 2.3 0.0023 P8 GC+1d culture CTGCCCTGGG (9) 2.3 0.0023 P8 GC+1d culture GCTGCCCTGG (12) 2.3 0.0023 P8 GC+1d culture CCTGCTTCCT (5) 1.1 0.0011 P8 GC+1d culture GTGTCCAGCT (5) 1.1 0.0011 P8 GC+SHH+1d culture CCCCCACAAA (3) 7 0.007 P8 GC+SHH+1d culture CTGCCCTGGG (9) 5.9 0.0059 P8 GC+SHH+1d culture GATCCCAAAT (5) 4.7 0.0047 P8 GC+SHH+1d culture GTGTCCAGCT (5) 2.3 0.0023 P8 GC+SHH+1d culture TTACCCTTCC (2) 2.3 0.0023 P8 GC+SHH+1d culture GCTGCCCTGG (12) 1.2 0.0012 P8 GC+SHH+1d culture TCTGACTGAA (3) 1.2 0.0012 3T3 fibroblasts AAAACCATTG 3.5 0.0035 3T3 fibroblasts GCTGCCCTGG (12) 3.5 0.0035 3T3 fibroblasts GTGTCCAGCT (5) 3.5 0.0035 3T3 fibroblasts TTACCCTTCC (2) 3.5 0.0035 E15 cortex CCTGCTTCCT (5) 9.9 0.0099 E15 cortex CTGCCCTGGG (9) 9.9 0.0099 E15 cortex GCTGCCCTGG (12) 4.9 0.0049 P1 cortex CCTGCTTCCT (5) 4.5 0.0045 P1 cortex GCGTTCCAGA (2) 4.5 0.0045 Hypothalamus AAAACCATTG 1.8 0.0018 Hypothalamus AGAAAATGCT (4) 1.8 0.0018 Hypothalamus CCTGCTTCCT (5) 1.8 0.0018 Hypothalamus CTGCCCTGGG (9) 1.8 0.0018 Hypothalamus GCGTTCCAGA (2) 1.8 0.0018 Hypothalamus GCTGCCCTGG (12) 1.8 0.0018 Hypothalamus GTGTCCAGCT (5) 1.8 0.0018 Hypothalamus TAGAATCAGG (2) 1.8 0.0018 Hypothalamus TCTGACCTGA (12) 1.8 0.0018 E12.5 retina GATCCCAAAT (5) 7.5 0.0075 E12.5 retina GCGTTCCAGA (2) 3.8 0.0038 E12.5 retina AAAACCATTG 1.9 0.0019 E12.5 retina CTGCCCTGGG (9) 1.9 0.0019 E12.5 retina TAGAATCAGG (2) 1.9 0.0019 E12.5 retina TCTGACCTGA (12) 1.9 0.0019 E12.5 retina TTTGACAATG (5) 1.9 0.0019 E14.5 retina GATCCCAAAT (5) 3.6 0.0036 E14.5 retina GTGTCCAGCT (5) 3.6 0.0036 E14.5 retina CCTGCTTCCT (5) 1.8 0.0018 E14.5 retina CTGCCCTGGG (9) 1.8 0.0018 E14.5 retina GCGTTCCAGA (2) 1.8 0.0018 E14.5 retina GCTGCCCTGG (12) 1.8 0.0018 E14.5 retina TCTGACCTGA (12) 1.8 0.0018 E14.5 retina TCTGACTGAA (3) 1.8 0.0018 E16.5 retina CTGCCCTGGG (9) 10.9 0.0109 E16.5 retina AGAAAATGCT (4) 3.6 0.0036 E16.5 retina GATCCCAAAT (5) 1.8 0.0018 E16.5 retina GCGTTCCAGA (2) 1.8 0.0018 E16.5 retina GCTGCCCTGG (12) 1.8 0.0018 E16.5 retina GTGTCCAGCT (5) 1.8 0.0018 E18.5 retina GATCCCAAAT (5) 5.5 0.0055 P0.5 retina CATCTAGAGG (11) 25.5 0.0255 P0.5 retina GATCCCAAAT (5) 3.9 0.0039 P0.5 retina AGAAAATGCT (4) 2 0.002 P0.5 retina CCTGCTTCCT (5) 2 0.002 P0.5 retina GCGTTCCAGA (2) 2 0.002 P0.5 retina GCTGGGGGTG (2) 2 0.002 P0.5 retina TCTGACTGAA (3) 2 0.002 P0.5 retina TTACCCTTCC (2) 2 0.002 P2.5 retina GATCCCAAAT (5) 7 0.007 P2.5 retina CTGCCCTGGG (9) 5.3 0.0053 P2.5 retina GCGTTCCAGA (2) 3.5 0.0035 P2.5 retina GCTGCCCTGG (12) 3.5 0.0035 P2.5 retina CATCTAGAGG (11) 1.8 0.0018 P2.5 retina TCTGACCTGA (12) 1.8 0.0018 P2.5 retina TCTGACTGAA (3) 1.8 0.0018 P2.5 retina TTACCCTTCC (2) 1.8 0.0018 P4.5 retina GATCCCAAAT (5) 4 0.004 P4.5 retina CATCTAGAGG (11) 2 0.002 P4.5 retina GCGTTCCAGA (2) 2 0.002 P4.5 retina GTGTCCAGCT (5) 2 0.002 P6.5 retina CTGCCCTGGG (9) 6.7 0.0067 P6.5 retina GATCCCAAAT (5) 5 0.005 P6.5 retina GCGTTCCAGA (2) 3.3 0.0033 P6.5 retina AAAACCATTG 1.7 0.0017 P6.5 retina CCTGCTTCCT (5) 1.7 0.0017 P6.5 retina GCTGGGGGTG (2) 1.7 0.0017 P6.5 retina GTGTCCAGCT (5) 1.7 0.0017 P6.5 retina TCTGACTGAA (3) 1.7 0.0017 P10.5 crx- retina GATCCCAAAT (5) 7.4 0.0074 P10.5 crx- retina AGAAAATGCT (4) 3.7 0.0037 P10.5 crx- retina CTGCCCTGGG (9) 3.7 0.0037 P10.5 crx- retina GTGTCCAGCT (5) 3.7 0.0037 P10.5 crx- retina AAAACCATTG 1.9 0.0019 P10.5 crx- retina TCTGACTGAA (3) 1.9 0.0019 P10.5 crx+ retina CTGCCCTGGG (9) 5.8 0.0058 P10.5 crx+ retina GATCCCAAAT (5) 5.8 0.0058 P10.5 crx+ retina CATCTAGAGG (11) 1.9 0.0019 P10.5 crx+ retina GTGTCCAGCT (5) 1.9 0.0019 Adult retinal CATCTAGAGG (11) 7.4 0.0074 Adult retinal GCTGCCCTGG (12) 3.7 0.0037 Adult retinal CCTGCTTCCT (5) 1.9 0.0019 Adult retinal CTGCCCTGGG (9) 1.9 0.0019 Adult retinal GATCCCAAAT (5) 1.9 0.0019 Adult retinal GCGTTCCAGA (2) 1.9 0.0019 Adult retinal GTGTCCAGCT (5) 1.9 0.0019 Adult retinal TAGAATCAGG (2) 1.9 0.0019 ONL GATCCCAAAT (5) 3.8 0.0038 ONL TCTGACCTGA (12) 3.8 0.0038 ONL AGAAAATGCT (4) 1.9 0.0019 ONL CTGCCCTGGG (9) 1.9 0.0019 ONL GCTGGGGGTG (2) 1.9 0.0019 ONL GTGTCCAGCT (5) 1.9 0.0019