Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.271798	Htf9c	HpaII tiny fragments locus 9c	16	16 10.9 cM	15547
Gene Ontology	ATP binding | protein amino acid phosphorylation | protein kinase activity | RNA binding | S-adenosylmethionine-dependent methyltransferase activity
Human Homolog	HTF9C[HpaII tiny fragments locus 9C]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 74 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATACTTCCAC (2) 4.9 0.0049 P8 Cb GC CAAAGAAGCA (2) 1.6 0.0016 P8 Cb GC CTGCAAGGGT (3) 1.6 0.0016 P8 Cb GC GCTAGGAAAG (3) 1.6 0.0016 P8 Cb GC GGCAACTTTG (8) 1.6 0.0016 P8 Cb GC GTTAGAGACA (2) 1.6 0.0016 P8 Cb GC TGTGTGACAG (3) 1.6 0.0016 Cb medulloblastoma GCTGCCCTGG (12) 6.9 0.0069 Cb medulloblastoma GCTGCCTGGG (2) 2.3 0.0023 Cb medulloblastoma GTTAGAGACA (2) 2.3 0.0023 Cb medulloblastoma TGTGTGACAG (3) 2.3 0.0023 P8 GC+1d culture ATACTTCCAC (2) 3.4 0.0034 P8 GC+1d culture GCTGCCCTGG (12) 2.3 0.0023 P8 GC+1d culture GGCAACTTTG (8) 2.3 0.0023 P8 GC+1d culture CTGCAAGGGT (3) 1.1 0.0011 P8 GC+1d culture GCTGCCTGGG (2) 1.1 0.0011 P8 GC+SHH+1d culture ATACTTCCAC (2) 4.7 0.0047 P8 GC+SHH+1d culture AAAATTTCTT (8) 1.2 0.0012 P8 GC+SHH+1d culture GCTAGGAAAG (3) 1.2 0.0012 P8 GC+SHH+1d culture GCTGCCCTGG (12) 1.2 0.0012 3T3 fibroblasts CTGCAAGGGT (3) 7 0.007 3T3 fibroblasts ATACTTCCAC (2) 3.5 0.0035 3T3 fibroblasts CAAAGAAGCA (2) 3.5 0.0035 3T3 fibroblasts GCTGCCCTGG (12) 3.5 0.0035 3T3 fibroblasts GTTAGAGACA (2) 3.5 0.0035 E15 cortex GCTGCCTGGG (2) 14.8 0.0148 E15 cortex ATACTTCCAC (2) 4.9 0.0049 E15 cortex GCTGCCCTGG (12) 4.9 0.0049 P1 cortex CTGCAAGGGT (3) 4.5 0.0045 Hypothalamus AAAATTTCTT (8) 5.4 0.0054 Hypothalamus CTGCAAGGGT (3) 5.4 0.0054 Hypothalamus GCTGCCCTGG (12) 1.8 0.0018 E12.5 retina CCTGGCAAAG (3) 1.9 0.0019 E12.5 retina CTGCAAGGGT (3) 1.9 0.0019 E14.5 retina ATACTTCCAC (2) 5.5 0.0055 E14.5 retina CTGCAAGGGT (3) 1.8 0.0018 E14.5 retina GCTGCCCTGG (12) 1.8 0.0018 E16.5 retina AACAAGGGCC 1.8 0.0018 E16.5 retina CAAAGAAGCA (2) 1.8 0.0018 E16.5 retina GCTAGGAAAG (3) 1.8 0.0018 E16.5 retina GCTGCCCTGG (12) 1.8 0.0018 E16.5 retina TGTGTGACAG (3) 1.8 0.0018 E18.5 retina CTGCAAGGGT (3) 3.6 0.0036 E18.5 retina AAAATTTCTT (8) 1.8 0.0018 E18.5 retina GGCAACTTTG (8) 1.8 0.0018 E18.5 retina TGTGTGACAG (3) 1.8 0.0018 P0.5 retina ATACTTCCAC (2) 5.9 0.0059 P0.5 retina GGCAACTTTG (8) 3.9 0.0039 P0.5 retina AACAAGGGCC 2 0.002 P0.5 retina CTGCAAGGGT (3) 2 0.002 P2.5 retina CTGCAAGGGT (3) 3.5 0.0035 P2.5 retina GCTGCCCTGG (12) 3.5 0.0035 P2.5 retina ATACTTCCAC (2) 1.8 0.0018 P2.5 retina TGTGTGACAG (3) 1.8 0.0018 P4.5 retina AAAATTTCTT (8) 2 0.002 P4.5 retina ATACTTCCAC (2) 2 0.002 P4.5 retina CAAAGAAGCA (2) 2 0.002 P4.5 retina CCTGGCAAAG (3) 2 0.002 P4.5 retina CTGCAAGGGT (3) 2 0.002 P6.5 retina ATACTTCCAC (2) 5 0.005 P6.5 retina CAAAGAAGCA (2) 3.3 0.0033 P6.5 retina CTGCAAGGGT (3) 3.3 0.0033 P6.5 retina AAAATTTCTT (8) 1.7 0.0017 P10.5 crx- retina CCTGGCAAAG (3) 1.9 0.0019 P10.5 crx- retina CTGCAAGGGT (3) 1.9 0.0019 P10.5 crx+ retina CTGCAAGGGT (3) 1.9 0.0019 P10.5 crx+ retina TGTGTGACAG (3) 1.9 0.0019 Adult retinal CTGCAAGGGT (3) 3.7 0.0037 Adult retinal GCTGCCCTGG (12) 3.7 0.0037 Adult retinal GGCAACTTTG (8) 3.7 0.0037 Adult retinal ATACTTCCAC (2) 1.9 0.0019 ONL AAAATTTCTT (8) 1.9 0.0019 ONL CAAACCTGTT (3) 1.9 0.0019 ONL CTGCAAGGGT (3) 1.9 0.0019