Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.272920	Smad5	MAD homolog 5 (Drosophila)	13	13 35.0 cM	17129
Gene Ontology	angiogenesis | BMP signaling pathway | common-partner SMAD protein phosphorylation | intracellular | organogenesis | protein binding | regulation of transcription, DNA-dependent | SMAD protein heteromerization | transforming growth factor beta receptor signaling pathway
Human Homolog	SMAD5[SMAD, mothers against DPP homolog 5 (Drosophila)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 75 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTGTAATCC (34) 6.5 0.0065 P8 Cb GC CAATTTTGTA (7) 3.3 0.0033 P8 Cb GC GCATTTACCT 3.3 0.0033 P8 Cb GC GGATCGAGGC (2) 1.6 0.0016 P8 Cb GC TGCCACCATT (3) 1.6 0.0016 P8 Cb GC TGTGCTGGGC (3) 1.6 0.0016 Cb medulloblastoma CCTGTAATCC (34) 11.6 0.0116 Cb medulloblastoma TGCCACCATT (3) 4.6 0.0046 P8 GC+1d culture CAATTTTGTA (7) 3.4 0.0034 P8 GC+1d culture TGTGCTGGGC (3) 3.4 0.0034 P8 GC+1d culture GGGAGCCTTA 2.3 0.0023 P8 GC+1d culture CCTGTAATCC (34) 1.1 0.0011 P8 GC+1d culture CCTTTGATTC 1.1 0.0011 P8 GC+SHH+1d culture CCTGTAATCC (34) 4.7 0.0047 P8 GC+SHH+1d culture TGCCACCATT (3) 2.3 0.0023 P8 GC+SHH+1d culture CCATATATAT 1.2 0.0012 P8 GC+SHH+1d culture GGGAGCCTTA 1.2 0.0012 3T3 fibroblasts CCTGTAATCC (34) 10.5 0.0105 3T3 fibroblasts TGTGCTGGGC (3) 7 0.007 3T3 fibroblasts CCTTTGATTC 3.5 0.0035 3T3 fibroblasts GGGAGCCTTA 3.5 0.0035 3T3 fibroblasts TGCCACCATT (3) 3.5 0.0035 E15 cortex CCTGTAATCC (34) 4.9 0.0049 E15 cortex CCTTTGATTC 4.9 0.0049 E15 cortex GGGAGCCTTA 4.9 0.0049 E15 cortex TGTGCTGGGC (3) 4.9 0.0049 P1 cortex CCTGTAATCC (34) 13.6 0.0136 P1 cortex CAATTTTGTA (7) 4.5 0.0045 P1 cortex CCATATATAT 4.5 0.0045 P1 cortex GCATTTACCT 4.5 0.0045 Hypothalamus CCTGTAATCC (34) 5.4 0.0054 Hypothalamus TGCCACCATT (3) 3.6 0.0036 E12.5 retina CCTGTAATCC (34) 3.8 0.0038 E12.5 retina TGCCACCATT (3) 1.9 0.0019 E14.5 retina CCTGTAATCC (34) 5.5 0.0055 E14.5 retina TGTGCTGGGC (3) 3.6 0.0036 E14.5 retina CAATTTTGTA (7) 1.8 0.0018 E14.5 retina CCTTTGATTC 1.8 0.0018 E14.5 retina GGGAGCCTTA 1.8 0.0018 E14.5 retina TGACTTTCCA (2) 1.8 0.0018 E16.5 retina CCTGTAATCC (34) 3.6 0.0036 E16.5 retina TGCCACCATT (3) 1.8 0.0018 E18.5 retina CAATTTTGTA (7) 1.8 0.0018 E18.5 retina CCTGTAATCC (34) 1.8 0.0018 E18.5 retina GGGAGCCTTA 1.8 0.0018 E18.5 retina TGACTTTCCA (2) 1.8 0.0018 E18.5 retina TGTGCTGGGC (3) 1.8 0.0018 P0.5 retina CCTGTAATCC (34) 3.9 0.0039 P0.5 retina TGTGCTGGGC (3) 2 0.002 P2.5 retina TGCCACCATT (3) 8.8 0.0088 P2.5 retina CCTGTAATCC (34) 3.5 0.0035 P2.5 retina GGGAGCCTTA 3.5 0.0035 P2.5 retina CCTTTGATTC 1.8 0.0018 P4.5 retina CCTGTAATCC (34) 5.9 0.0059 P4.5 retina CCATATATAT 2 0.002 P4.5 retina GGATCGAGGC (2) 2 0.002 P4.5 retina GGGAGCCTTA 2 0.002 P4.5 retina TGCCACCATT (3) 2 0.002 P6.5 retina TGCCACCATT (3) 5 0.005 P6.5 retina TGTGCTGGGC (3) 3.3 0.0033 P6.5 retina CAATTTTGTA (7) 1.7 0.0017 P6.5 retina CCTGTAATCC (34) 1.7 0.0017 P10.5 crx- retina TGTGCTGGGC (3) 5.6 0.0056 P10.5 crx- retina CCTGTAATCC (34) 3.7 0.0037 P10.5 crx- retina TGCCACCATT (3) 1.9 0.0019 P10.5 crx+ retina CCTGTAATCC (34) 3.8 0.0038 P10.5 crx+ retina CAATTTTGTA (7) 1.9 0.0019 P10.5 crx+ retina GGGAGCCTTA 1.9 0.0019 P10.5 crx+ retina TGCCACCATT (3) 1.9 0.0019 Adult retinal CCTGTAATCC (34) 3.7 0.0037 Adult retinal GGGAGCCTTA 1.9 0.0019 Adult retinal TGACTTTCCA (2) 1.9 0.0019 Adult retinal TGCCACCATT (3) 1.9 0.0019 ONL CCTGTAATCC (34) 3.8 0.0038 ONL CAATTTTGTA (7) 1.9 0.0019