Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.276337	Rpl17	ribosomal protein L17	7	18 E3	319195
Gene Ontology	intracellular | large ribosomal subunit | protein biosynthesis | ribosome | structural constituent of ribosome
Human Homolog	RPL17[ribosomal protein L17]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 278 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCCGGGAAT (4) 316.5 0.3165 P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CACAAACGGT (5) 192.5 0.1925 P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC GCTTAAAAAT (6) 9.8 0.0098 P8 Cb GC AGCTCTGTAG (4) 6.5 0.0065 P8 Cb GC AGCTCCCCCT (3) 3.3 0.0033 P8 Cb GC GCCCGGGACT (7) 3.3 0.0033 P8 Cb GC GGGGGGGGCA (8) 3.3 0.0033 P8 Cb GC CTTTAAAATG (5) 1.6 0.0016 P8 Cb GC GCCCGGGAAA (5) 1.6 0.0016 P8 Cb GC GCCCGGGAAC (5) 1.6 0.0016 P8 Cb GC GCCCGGGCAA (2) 1.6 0.0016 P8 Cb GC TGCAGCAAAA (2) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GCCCGGGAAT (4) 228.9 0.2289 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma CACAAACGGT (5) 101.7 0.1017 Cb medulloblastoma GCTTAAAAAT (6) 16.2 0.0162 Cb medulloblastoma CGTCGCGCAC 9.2 0.0092 Cb medulloblastoma GCCCGGGAAC (5) 2.3 0.0023 Cb medulloblastoma GCCCGGGACT (7) 2.3 0.0023 Cb medulloblastoma GCCCGGGCAA (2) 2.3 0.0023 Cb medulloblastoma GCCCGGGGAT (3) 2.3 0.0023 Cb medulloblastoma GCCCGGGTAT 2.3 0.0023 Cb medulloblastoma GGCCGGGAAT (5) 2.3 0.0023 P8 GC+1d culture GCCCGGGAAT (4) 238.6 0.2386 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CACAAACGGT (5) 110.7 0.1107 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture GCTTAAAAAT (6) 12.6 0.0126 P8 GC+1d culture GGGGGGGGCA (8) 9.1 0.0091 P8 GC+1d culture GGGGTACCCC (7) 4.6 0.0046 P8 GC+1d culture AGCTCTGTAG (4) 3.4 0.0034 P8 GC+1d culture GCCCGGGGAT (3) 3.4 0.0034 P8 GC+1d culture TGCAGCAAAA (2) 3.4 0.0034 P8 GC+1d culture GCCCGGGAAC (5) 2.3 0.0023 P8 GC+1d culture AGCTCCCCCT (3) 1.1 0.0011 P8 GC+1d culture ATTTTGTGGG 1.1 0.0011 P8 GC+1d culture GGCCGGGAAT (5) 1.1 0.0011 P8 GC+1d culture TTATTAAACA (2) 1.1 0.0011 P8 GC+SHH+1d culture GCCCGGGAAT (4) 347.8 0.3478 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CACAAACGGT (5) 118.3 0.1183 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture GCTTAAAAAT (6) 17.6 0.0176 P8 GC+SHH+1d culture AGCTCCCCCT (3) 5.9 0.0059 P8 GC+SHH+1d culture ATTTTGTGGG 5.9 0.0059 P8 GC+SHH+1d culture GGGGGGGGCA (8) 4.7 0.0047 P8 GC+SHH+1d culture TGCAGCAAAA (2) 3.5 0.0035 P8 GC+SHH+1d culture CGTCGCGCAC 1.2 0.0012 P8 GC+SHH+1d culture CTGCTGCTGG (6) 1.2 0.0012 P8 GC+SHH+1d culture GCCCGGGAAC (5) 1.2 0.0012 P8 GC+SHH+1d culture GCCCGGGGAT (3) 1.2 0.0012 P8 GC+SHH+1d culture GGCCGGGAAT (5) 1.2 0.0012 P8 GC+SHH+1d culture GGGGTACCCC (7) 1.2 0.0012 3T3 fibroblasts CACAAACGGT (5) 150.7 0.1507 3T3 fibroblasts GCCCGGGAAT (4) 105.1 0.1051 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts AGCTCCCCCT (3) 7 0.007 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts TGCAGCAAAA (2) 7 0.007 3T3 fibroblasts ATTTTGTGGG 3.5 0.0035 3T3 fibroblasts GGCCCGGGAA (2) 3.5 0.0035 3T3 fibroblasts GGGGTACCCC (7) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex GCCCGGGAAT (4) 207.8 0.2078 E15 cortex CACAAACGGT (5) 69.3 0.0693 E15 cortex AGCTCCCCCT (3) 44.5 0.0445 E15 cortex GCCGGATTAA (2) 14.8 0.0148 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex CTGCTGCTGG (6) 4.9 0.0049 E15 cortex GCCCCGGGAA (2) 4.9 0.0049 E15 cortex GCCCGGGAAC (5) 4.9 0.0049 E15 cortex GGCCGGGAAT (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CACAAACGGT (5) 86.4 0.0864 P1 cortex GCCCGGGAAT (4) 63.6 0.0636 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex CTTTAAAATG (5) 9.1 0.0091 P1 cortex GCCGGGAATA (2) 4.5 0.0045 Hypothalamus GCCCGGGAAT (4) 320.6 0.3206 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CACAAACGGT (5) 54.3 0.0543 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus GCTTAAAAAT (6) 7.2 0.0072 Hypothalamus TGCAGCAAAA (2) 7.2 0.0072 Hypothalamus ATTTTGTGGG 3.6 0.0036 Hypothalamus GCCCGGGGAA (4) 3.6 0.0036 Hypothalamus GGCCGGGAAT (5) 3.6 0.0036 Hypothalamus AGCTCTGTAG (4) 1.8 0.0018 Hypothalamus CGTCGCGCAC 1.8 0.0018 Hypothalamus GCCCCGGGAA (2) 1.8 0.0018 Hypothalamus GCCCGGGACT (7) 1.8 0.0018 Hypothalamus GGCCCGGGAA (2) 1.8 0.0018 Hypothalamus GGGGTACCCC (7) 1.8 0.0018 E12.5 retina GCCCGGGAAT (4) 499.4 0.4994 E12.5 retina CACAAACGGT (5) 287.2 0.2872 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina AGCTCTGTAG (4) 5.6 0.0056 E12.5 retina AGCTCCCCCT (3) 3.8 0.0038 E12.5 retina CTTAAAAATG (2) 3.8 0.0038 E12.5 retina GCCCGGGGAA (4) 3.8 0.0038 E12.5 retina GCTTAAAAAT (6) 3.8 0.0038 E12.5 retina TGCAGCAAAA (2) 3.8 0.0038 E12.5 retina ATTTTGTGGG 1.9 0.0019 E12.5 retina CAAATCAAGA 1.9 0.0019 E12.5 retina CATAAAATAA (2) 1.9 0.0019 E12.5 retina GCCCGGGCAA (2) 1.9 0.0019 E12.5 retina GCCGGGAATA (2) 1.9 0.0019 E12.5 retina GGGGTACCCC (7) 1.9 0.0019 E14.5 retina GCCCGGGAAT (4) 329.8 0.3298 E14.5 retina CACAAACGGT (5) 131.2 0.1312 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina GCTTAAAAAT (6) 21.9 0.0219 E14.5 retina TGCAGCAAAA (2) 10.9 0.0109 E14.5 retina ATTTTGTGGG 7.3 0.0073 E14.5 retina GCCCGGGCAA (2) 7.3 0.0073 E14.5 retina GGGGTACCCC (7) 5.5 0.0055 E14.5 retina AGCTCCCCCT (3) 3.6 0.0036 E14.5 retina AGCTCTGTAG (4) 3.6 0.0036 E14.5 retina GGCCGGGAAT (5) 3.6 0.0036 E14.5 retina CAAATCAAGA 1.8 0.0018 E14.5 retina CATAAAATAA (2) 1.8 0.0018 E14.5 retina CTGCTGCTGG (6) 1.8 0.0018 E14.5 retina GCCCCGGGAA (2) 1.8 0.0018 E14.5 retina GCCCGGGACT (7) 1.8 0.0018 E14.5 retina GCCCGGGGAA (4) 1.8 0.0018 E14.5 retina GCCGGATTAA (2) 1.8 0.0018 E14.5 retina GGCCCGGGAA (2) 1.8 0.0018 E14.5 retina TTATTAAACA (2) 1.8 0.0018 E16.5 retina GCCCGGGAAT (4) 273.5 0.2735 E16.5 retina CACAAACGGT (5) 199.2 0.1992 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina AGCTCTGTAG (4) 12.7 0.0127 E16.5 retina GCTTAAAAAT (6) 12.7 0.0127 E16.5 retina GCCGGATTAA (2) 9.1 0.0091 E16.5 retina GGGGTACCCC (7) 9.1 0.0091 E16.5 retina TGCAGCAAAA (2) 7.2 0.0072 E16.5 retina AGCTCCCCCT (3) 1.8 0.0018 E16.5 retina ATGAGCTTTT (8) 1.8 0.0018 E16.5 retina ATTTTGTGGG 1.8 0.0018 E16.5 retina GCCCGGGAAC (5) 1.8 0.0018 E16.5 retina GCCCGGGACT (7) 1.8 0.0018 E16.5 retina GCCCGGGGAA (4) 1.8 0.0018 E18.5 retina GCCCGGGAAT (4) 603.9 0.6039 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CACAAACGGT (5) 120.1 0.1201 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina GCTTAAAAAT (6) 20 0.02 E18.5 retina AGCTCCCCCT (3) 7.3 0.0073 E18.5 retina GCCCCGGGAA (2) 5.5 0.0055 E18.5 retina AGCTCTGTAG (4) 3.6 0.0036 E18.5 retina ATGAGCTTTT (8) 1.8 0.0018 E18.5 retina CAAATCAAGA 1.8 0.0018 E18.5 retina GCCCGGGAAA (5) 1.8 0.0018 E18.5 retina GCCCGGGACT (7) 1.8 0.0018 E18.5 retina GCCCGGGGAA (4) 1.8 0.0018 E18.5 retina GCCGGGAATA (2) 1.8 0.0018 E18.5 retina GGCACTTTTT (6) 1.8 0.0018 E18.5 retina GGGGTACCCC (7) 1.8 0.0018 E18.5 retina TGCAGCAAAA (2) 1.8 0.0018 E18.5 retina TTATTAAACA (2) 1.8 0.0018 P0.5 retina GCCCGGGAAT (4) 319.9 0.3199 P0.5 retina CACAAACGGT (5) 233.5 0.2335 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina GCCCCGGGAA (2) 5.9 0.0059 P0.5 retina GCTTAAAAAT (6) 3.9 0.0039 P0.5 retina GGGGTACCCC (7) 3.9 0.0039 P0.5 retina TGCAGCAAAA (2) 3.9 0.0039 P0.5 retina AGCTCCCCCT (3) 2 0.002 P0.5 retina AGCTCCCCTG (2) 2 0.002 P0.5 retina ATTTTGTGGG 2 0.002 P0.5 retina GCACAGGAAT (2) 2 0.002 P0.5 retina GCCCGGGAAA (5) 2 0.002 P0.5 retina GCCCGGGGAA (4) 2 0.002 P0.5 retina GCCCGGGGAT (3) 2 0.002 P0.5 retina GCCCGGGTAT 2 0.002 P0.5 retina GCCGGGAATA (2) 2 0.002 P0.5 retina TTATTAAACA (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GCCCGGGAAT (4) 327.3 0.3273 P2.5 retina CACAAACGGT (5) 119.7 0.1197 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina GCTTAAAAAT (6) 10.6 0.0106 P2.5 retina GCCCGGGGAA (4) 5.3 0.0053 P2.5 retina AGCTCCCCCT (3) 3.5 0.0035 P2.5 retina AGCTCTGTAG (4) 3.5 0.0035 P2.5 retina CATAAAATAA (2) 3.5 0.0035 P2.5 retina GCCCCGGGAA (2) 3.5 0.0035 P2.5 retina GCCCGGGAAA (5) 3.5 0.0035 P2.5 retina GCCCGGGGAT (3) 3.5 0.0035 P2.5 retina CGTCGCGCAC 1.8 0.0018 P2.5 retina CTTTAAAATG (5) 1.8 0.0018 P2.5 retina GCCCGGGAAC (5) 1.8 0.0018 P2.5 retina GCCGGGAATA (2) 1.8 0.0018 P2.5 retina GGCACTTTTT (6) 1.8 0.0018 P2.5 retina GGCCCGGGAA (2) 1.8 0.0018 P2.5 retina GGCCGGGAAT (5) 1.8 0.0018 P2.5 retina GGGGTACCCC (7) 1.8 0.0018 P4.5 retina GCCCGGGAAT (4) 352.7 0.3527 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina CACAAACGGT (5) 89.2 0.0892 P4.5 retina GCCCGGGAAC (5) 5.9 0.0059 P4.5 retina GCTTAAAAAT (6) 5.9 0.0059 P4.5 retina GCCCGGGAAA (5) 4 0.004 P4.5 retina AGCTCCCCTG (2) 2 0.002 P4.5 retina AGCTCTGTAG (4) 2 0.002 P4.5 retina CAAATCAAGA 2 0.002 P4.5 retina GCCCCGGGAA (2) 2 0.002 P4.5 retina GGCCGGGAAT (5) 2 0.002 P4.5 retina TTATTAAACA (2) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina GCCCGGGAAT (4) 225.1 0.2251 P6.5 retina CACAAACGGT (5) 93.4 0.0934 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina GCTTAAAAAT (6) 11.7 0.0117 P6.5 retina GCCCCGGGAA (2) 10 0.01 P6.5 retina AGCTCTGTAG (4) 3.3 0.0033 P6.5 retina GCACAGGAAT (2) 3.3 0.0033 P6.5 retina GGCACTTTTT (6) 3.3 0.0033 P6.5 retina CTTAAAAATG (2) 1.7 0.0017 P6.5 retina GCCCGGGGAA (4) 1.7 0.0017 P6.5 retina GCCCGGGTAT 1.7 0.0017 P6.5 retina GCCGGATTAA (2) 1.7 0.0017 P6.5 retina GGCCCGGGAA (2) 1.7 0.0017 P10.5 crx- retina CACAAACGGT (5) 222.9 0.2229 P10.5 crx- retina GCCCGGGAAT (4) 50.2 0.0502 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina GCTTAAAAAT (6) 5.6 0.0056 P10.5 crx- retina ATTTTGTGGG 3.7 0.0037 P10.5 crx- retina CGTCGCGCAC 3.7 0.0037 P10.5 crx- retina CAAATCAAGA 1.9 0.0019 P10.5 crx- retina GCCCCGGGAA (2) 1.9 0.0019 P10.5 crx- retina GCCCGGGGAA (4) 1.9 0.0019 P10.5 crx- retina GCCGGATTAA (2) 1.9 0.0019 P10.5 crx- retina GGCACTTTTT (6) 1.9 0.0019 P10.5 crx- retina GGGGTACCCC (7) 1.9 0.0019 P10.5 crx- retina TGCAGCAAAA (2) 1.9 0.0019 P10.5 crx+ retina GCCCGGGAAT (4) 246.1 0.2461 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CACAAACGGT (5) 82.7 0.0827 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina AGCTCTGTAG (4) 3.8 0.0038 P10.5 crx+ retina ATGAGCTTTT (8) 1.9 0.0019 P10.5 crx+ retina ATTTTGTGGG 1.9 0.0019 P10.5 crx+ retina GCCCCGGGAA (2) 1.9 0.0019 P10.5 crx+ retina GGGGGGGGCA (8) 1.9 0.0019 P10.5 crx+ retina TTATTAAACA (2) 1.9 0.0019 Adult retinal GCCCGGGAAT (4) 70.4 0.0704 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CACAAACGGT (5) 50 0.05 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal AGCTCCCCCT (3) 5.6 0.0056 Adult retinal GCCCGGGCAA (2) 3.7 0.0037 Adult retinal AGCTCCCCTG (2) 1.9 0.0019 Adult retinal CTGCTGCTGG (6) 1.9 0.0019 Adult retinal GCCCCGGGAA (2) 1.9 0.0019 Adult retinal GCTTAAAAAT (6) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL GCCCGGGAAT (4) 86.2 0.0862 ONL CACAAACGGT (5) 28.7 0.0287 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL GCCCGGGCAA (2) 15.3 0.0153 ONL AGCTCCCCCT (3) 1.9 0.0019 ONL CATAAAATAA (2) 1.9 0.0019 ONL GCCCGGGAAA (5) 1.9 0.0019 ONL GCTTAAAAAT (6) 1.9 0.0019 ONL GGGGGGGGCA (8) 1.9 0.0019 ONL GGGGTACCCC (7) 1.9 0.0019 ONL TGCAGCAAAA (2) 1.9 0.0019 ONL TTATTAAACA (2) 1.9 0.0019