Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.277719	Ppt1	palmitoyl-protein thioesterase 1	4	4 59.1 cM	19063
Gene Ontology	adult locomotory behavior | catalytic activity | extracellular space | grooming behavior | hydrolase activity | lysosome | palmitoyl-(protein) hydrolase activity | palmitoyl-(protein) hydrolase activity | protein modification
Human Homolog	PPT1[palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 96 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTTTAATCC (355) 52.2 0.0522 P8 Cb GC AGACCCTGTC (35) 6.5 0.0065 P8 Cb GC AAAAAAAAAC (24) 4.9 0.0049 P8 Cb GC AAAGCACCAT (4) 1.6 0.0016 P8 Cb GC CAGGTAAAAA (2) 1.6 0.0016 P8 Cb GC GAGATGTTTT (5) 1.6 0.0016 Cb medulloblastoma CCTTTAATCC (355) 41.6 0.0416 Cb medulloblastoma AGACCCTGTC (35) 20.8 0.0208 Cb medulloblastoma AAAGCACCAT (4) 6.9 0.0069 Cb medulloblastoma AAAAAAAAAC (24) 4.6 0.0046 Cb medulloblastoma CATCACCACA (7) 4.6 0.0046 Cb medulloblastoma AAAAAAAACA (13) 2.3 0.0023 P8 GC+1d culture CCTTTAATCC (355) 32 0.032 P8 GC+1d culture CATCACCACA (7) 5.7 0.0057 P8 GC+1d culture AGACCCTGTC (35) 4.6 0.0046 P8 GC+1d culture AAAAAAAAAC (24) 1.1 0.0011 P8 GC+1d culture AAAGCACCAT (4) 1.1 0.0011 P8 GC+SHH+1d culture CCTTTAATCC (355) 25.8 0.0258 P8 GC+SHH+1d culture AAAAAAAAAC (24) 3.5 0.0035 P8 GC+SHH+1d culture AAAGCACCAT (4) 2.3 0.0023 P8 GC+SHH+1d culture CATCACCACA (7) 2.3 0.0023 P8 GC+SHH+1d culture AGACCCTGTC (35) 1.2 0.0012 P8 GC+SHH+1d culture CAGGTAAAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture GAGATGTTTT (5) 1.2 0.0012 3T3 fibroblasts CCTTTAATCC (355) 70.1 0.0701 E15 cortex CCTTTAATCC (355) 54.4 0.0544 E15 cortex AGACCCTGTC (35) 14.8 0.0148 E15 cortex AAAAAAAAAC (24) 4.9 0.0049 P1 cortex CCTTTAATCC (355) 154.5 0.1545 P1 cortex AAAAAAAAAC (24) 9.1 0.0091 P1 cortex AGACCCTGTC (35) 4.5 0.0045 Hypothalamus CCTTTAATCC (355) 19.9 0.0199 Hypothalamus AAAGCACCAT (4) 5.4 0.0054 Hypothalamus AAAAAAAAAC (24) 1.8 0.0018 Hypothalamus AGACCCTGTC (35) 1.8 0.0018 Hypothalamus CATCACCACA (7) 1.8 0.0018 E12.5 retina CCTTTAATCC (355) 75.1 0.0751 E12.5 retina AGACCCTGTC (35) 5.6 0.0056 E12.5 retina AAAGCACCAT (4) 3.8 0.0038 E12.5 retina CATCACCACA (7) 1.9 0.0019 E12.5 retina GAGATGTTTT (5) 1.9 0.0019 E14.5 retina CCTTTAATCC (355) 120.3 0.1203 E14.5 retina AGACCCTGTC (35) 5.5 0.0055 E14.5 retina AAAAAAAAAC (24) 1.8 0.0018 E14.5 retina AAAGCACCAT (4) 1.8 0.0018 E14.5 retina CATCACCACA (7) 1.8 0.0018 E14.5 retina GAGATGTTTT (5) 1.8 0.0018 E16.5 retina CCTTTAATCC (355) 68.8 0.0688 E16.5 retina AGACCCTGTC (35) 3.6 0.0036 E16.5 retina AAAAAAAAAC (24) 1.8 0.0018 E16.5 retina AAAAAAAACA (13) 1.8 0.0018 E16.5 retina AAAGCACCAT (4) 1.8 0.0018 E16.5 retina CATCACCACA (7) 1.8 0.0018 E16.5 retina CTTATAATCC (6) 1.8 0.0018 E18.5 retina CCTTTAATCC (355) 23.6 0.0236 E18.5 retina AGACCCTGTC (35) 10.9 0.0109 E18.5 retina AAAAAAAAAC (24) 3.6 0.0036 E18.5 retina GAGATGTTTT (5) 3.6 0.0036 E18.5 retina AAAAAAAACA (13) 1.8 0.0018 P0.5 retina CCTTTAATCC (355) 72.6 0.0726 P0.5 retina AGACCCTGTC (35) 2 0.002 P2.5 retina CCTTTAATCC (355) 70.4 0.0704 P2.5 retina AGACCCTGTC (35) 12.3 0.0123 P2.5 retina AAAAAAAAAC (24) 5.3 0.0053 P2.5 retina CAGGTAAAAA (2) 3.5 0.0035 P2.5 retina AAAGCACCAT (4) 1.8 0.0018 P4.5 retina CCTTTAATCC (355) 43.6 0.0436 P4.5 retina AGACCCTGTC (35) 7.9 0.0079 P4.5 retina GAGATGTTTT (5) 4 0.004 P4.5 retina AAAAAAAAAC (24) 2 0.002 P4.5 retina AAAAAAAACA (13) 2 0.002 P4.5 retina CAGGTAAAAA (2) 2 0.002 P4.5 retina CATCACCACA (7) 2 0.002 P4.5 retina CTTATAATCC (6) 2 0.002 P6.5 retina CCTTTAATCC (355) 70 0.07 P6.5 retina AGACCCTGTC (35) 6.7 0.0067 P6.5 retina AAAAAAAAAC (24) 5 0.005 P10.5 crx- retina CCTTTAATCC (355) 63.2 0.0632 P10.5 crx- retina AAAGCACCAT (4) 9.3 0.0093 P10.5 crx- retina CATCACCACA (7) 5.6 0.0056 P10.5 crx- retina AAAAAAAAAC (24) 1.9 0.0019 P10.5 crx- retina AGACCCTGTC (35) 1.9 0.0019 P10.5 crx+ retina CCTTTAATCC (355) 38.4 0.0384 P10.5 crx+ retina AGACCCTGTC (35) 11.5 0.0115 P10.5 crx+ retina AAAAAAAACA (13) 1.9 0.0019 P10.5 crx+ retina AAAGCACCAT (4) 1.9 0.0019 P10.5 crx+ retina CATCACCACA (7) 1.9 0.0019 Adult retinal CCTTTAATCC (355) 129.6 0.1296 Adult retinal AGACCCTGTC (35) 13 0.013 Adult retinal CATCACCACA (7) 1.9 0.0019 ONL CCTTTAATCC (355) 84.3 0.0843 ONL AGACCCTGTC (35) 17.2 0.0172 ONL AAAAAAAACA (13) 1.9 0.0019 ONL AAAGCACCAT (4) 1.9 0.0019 ONL CATCACCACA (7) 1.9 0.0019 ONL CTTATAATCC (6) 1.9 0.0019