Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.278701	Srebf1	sterol regulatory element binding factor 1	8	8 33.0 cM	20787
Gene Ontology	cholesterol metabolism | DNA binding | endoplasmic reticulum | Golgi apparatus | integral to membrane | lipid metabolism | nucleus | regulation of transcription | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	SREBF1[sterol regulatory element binding transcription factor 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 141 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TACTACTTTG (2) 11.4 0.0114 P8 Cb GC AGGCCACAGC (3) 6.5 0.0065 P8 Cb GC AAGGCACAGC (5) 3.3 0.0033 P8 Cb GC CTCGCTTCTG (2) 1.6 0.0016 P8 Cb GC GCTGCCACCA (5) 1.6 0.0016 P8 Cb GC GGCCTGCCCC (6) 1.6 0.0016 P8 Cb GC GTGACACCTG (6) 1.6 0.0016 P8 Cb GC TGCAACACTG (5) 1.6 0.0016 P8 Cb GC TGGTGACACA (2) 1.6 0.0016 Cb medulloblastoma AGGCCACAGC (3) 9.2 0.0092 Cb medulloblastoma AAGGCACAGC (5) 4.6 0.0046 Cb medulloblastoma GGCCTGGCCT (4) 4.6 0.0046 Cb medulloblastoma TACTACTTTG (2) 4.6 0.0046 Cb medulloblastoma GCTGCCACCA (5) 2.3 0.0023 Cb medulloblastoma GTGACACCTG (6) 2.3 0.0023 Cb medulloblastoma TGCAACACTG (5) 2.3 0.0023 Cb medulloblastoma TGGTGACACA (2) 2.3 0.0023 P8 GC+1d culture AGGCCACAGC (3) 4.6 0.0046 P8 GC+1d culture GTGACACCTG (6) 3.4 0.0034 P8 GC+1d culture AAGGCACAGC (5) 2.3 0.0023 P8 GC+1d culture GGCCTGGCCT (4) 2.3 0.0023 P8 GC+1d culture ACCAAAGAAA (4) 1.1 0.0011 P8 GC+1d culture GCTGCCACAC (4) 1.1 0.0011 P8 GC+1d culture TGCAACACTG (5) 1.1 0.0011 P8 GC+SHH+1d culture AGGCCACAGC (3) 14.1 0.0141 P8 GC+SHH+1d culture TACTACTTTG (2) 10.5 0.0105 P8 GC+SHH+1d culture AAGGCACAGC (5) 1.2 0.0012 P8 GC+SHH+1d culture ACCAAAGAAA (4) 1.2 0.0012 P8 GC+SHH+1d culture CTCGCTTCTG (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTGCCACCA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGGTGACACA (2) 1.2 0.0012 3T3 fibroblasts GCTGCCACCA (5) 38.6 0.0386 3T3 fibroblasts GGCCTGGCCT (4) 7 0.007 3T3 fibroblasts CGTGCAGGCA 3.5 0.0035 3T3 fibroblasts CTCGCTTCTG (2) 3.5 0.0035 3T3 fibroblasts GTGACACCTG (6) 3.5 0.0035 E15 cortex GCTGCCACCA (5) 19.8 0.0198 E15 cortex AGGCCACAGC (3) 9.9 0.0099 E15 cortex GTGACACCTG (6) 9.9 0.0099 E15 cortex CTGGCCGAGG (3) 4.9 0.0049 E15 cortex GGCCTGCCCT 4.9 0.0049 E15 cortex GGCCTGGCCT (4) 4.9 0.0049 E15 cortex TGCAACACTG (5) 4.9 0.0049 P1 cortex GCTGCCACCA (5) 9.1 0.0091 P1 cortex GTGACACCTG (6) 9.1 0.0091 P1 cortex GGCCTGGCCT (4) 4.5 0.0045 P1 cortex TACTACTTTG (2) 4.5 0.0045 Hypothalamus AGGCCACAGC (3) 14.5 0.0145 Hypothalamus TACTACTTTG (2) 9.1 0.0091 Hypothalamus GGGCTGCCCT (7) 3.6 0.0036 Hypothalamus CTGGCCGAGG (3) 1.8 0.0018 Hypothalamus GCTGCCACAC (4) 1.8 0.0018 Hypothalamus GTGACACCTG (6) 1.8 0.0018 E12.5 retina AGGCCACAGC (3) 5.6 0.0056 E12.5 retina TACTACTTTG (2) 3.8 0.0038 E12.5 retina TGGTGACACA (2) 3.8 0.0038 E12.5 retina CTCGCTTCTG (2) 1.9 0.0019 E12.5 retina GCTGCCACAC (4) 1.9 0.0019 E12.5 retina GGCCTGCCCC (6) 1.9 0.0019 E12.5 retina GGCCTGGCCT (4) 1.9 0.0019 E12.5 retina GGGCTGCCCT (7) 1.9 0.0019 E14.5 retina AGGCCACAGC (3) 21.9 0.0219 E14.5 retina TACTACTTTG (2) 7.3 0.0073 E14.5 retina GGCCTGCCCC (6) 3.6 0.0036 E14.5 retina CGTGCAGGCA 1.8 0.0018 E14.5 retina CTCGCTTCTG (2) 1.8 0.0018 E14.5 retina TGCAACACTG (5) 1.8 0.0018 E14.5 retina TGGTGACACA (2) 1.8 0.0018 E16.5 retina AGGCCACAGC (3) 36.2 0.0362 E16.5 retina AAGGCACAGC (5) 3.6 0.0036 E16.5 retina GTGACACCTG (6) 3.6 0.0036 E16.5 retina GCTGCCACCA (5) 1.8 0.0018 E16.5 retina GGCCTGCCCC (6) 1.8 0.0018 E16.5 retina GGCCTGCCCT 1.8 0.0018 E16.5 retina GGCCTGGCCT (4) 1.8 0.0018 E16.5 retina GGGCTGCCCT (7) 1.8 0.0018 E16.5 retina TACTACTTTG (2) 1.8 0.0018 E16.5 retina TGCAACACTG (5) 1.8 0.0018 E16.5 retina TGGTGACACA (2) 1.8 0.0018 E18.5 retina TACTACTTTG (2) 7.3 0.0073 E18.5 retina AGGCCACAGC (3) 5.5 0.0055 E18.5 retina GGCCTGCCCC (6) 3.6 0.0036 E18.5 retina TGGTGACACA (2) 3.6 0.0036 E18.5 retina AAGGCACAGC (5) 1.8 0.0018 E18.5 retina GGCCTGCCCT 1.8 0.0018 E18.5 retina GGCCTGGCCT (4) 1.8 0.0018 E18.5 retina GTGACACCTG (6) 1.8 0.0018 P0.5 retina GGCCTGGCCT (4) 7.9 0.0079 P0.5 retina TACTACTTTG (2) 7.9 0.0079 P0.5 retina CTCGCTTCTG (2) 3.9 0.0039 P2.5 retina TACTACTTTG (2) 10.6 0.0106 P2.5 retina AAGGCACAGC (5) 3.5 0.0035 P2.5 retina AGGCCACAGC (3) 3.5 0.0035 P2.5 retina GCTGCCACCA (5) 3.5 0.0035 P2.5 retina GGCCTGCCCC (6) 3.5 0.0035 P2.5 retina CTCGCTTCTG (2) 1.8 0.0018 P2.5 retina CTGGCCGAGG (3) 1.8 0.0018 P2.5 retina TGGTGACACA (2) 1.8 0.0018 P4.5 retina TACTACTTTG (2) 9.9 0.0099 P4.5 retina GTGACACCTG (6) 4 0.004 P4.5 retina AAGGCACAGC (5) 2 0.002 P4.5 retina ACCAAAGAAA (4) 2 0.002 P4.5 retina AGGCCACAGC (3) 2 0.002 P4.5 retina GGCCTGCCCC (6) 2 0.002 P6.5 retina TACTACTTTG (2) 11.7 0.0117 P6.5 retina GTGACACCTG (6) 6.7 0.0067 P6.5 retina GGCCTGCCCC (6) 3.3 0.0033 P6.5 retina AGGCCACAGC (3) 1.7 0.0017 P6.5 retina CTCGCTTCTG (2) 1.7 0.0017 P6.5 retina GCCCCAACAG 1.7 0.0017 P6.5 retina GCTGCCACCA (5) 1.7 0.0017 P6.5 retina GGCCTGGCCT (4) 1.7 0.0017 P6.5 retina TGCAACACTG (5) 1.7 0.0017 P10.5 crx- retina AGGCCACAGC (3) 27.9 0.0279 P10.5 crx- retina TACTACTTTG (2) 13 0.013 P10.5 crx- retina AAGGCACAGC (5) 7.4 0.0074 P10.5 crx- retina GTGACACCTG (6) 3.7 0.0037 P10.5 crx- retina GCCCCAACAG 1.9 0.0019 P10.5 crx- retina GGCCTGCCCT 1.9 0.0019 P10.5 crx- retina GGGCTGCCCT (7) 1.9 0.0019 P10.5 crx+ retina TACTACTTTG (2) 7.7 0.0077 P10.5 crx+ retina GTGACACCTG (6) 5.8 0.0058 P10.5 crx+ retina TGGTGACACA (2) 5.8 0.0058 P10.5 crx+ retina AAGGCACAGC (5) 3.8 0.0038 P10.5 crx+ retina GCTGCCACAC (4) 3.8 0.0038 P10.5 crx+ retina AGGCCACAGC (3) 1.9 0.0019 P10.5 crx+ retina GCCCCAACAG 1.9 0.0019 P10.5 crx+ retina GGCCTGCCCC (6) 1.9 0.0019 Adult retinal GCCCCAACAG 5.6 0.0056 Adult retinal GGCCTGGCCT (4) 3.7 0.0037 Adult retinal GTGACACCTG (6) 3.7 0.0037 Adult retinal AAGGCACAGC (5) 1.9 0.0019 Adult retinal ACCAAAGAAA (4) 1.9 0.0019 Adult retinal GCTGCCACAC (4) 1.9 0.0019 Adult retinal TACTACTTTG (2) 1.9 0.0019 ONL GCCCCAACAG 5.7 0.0057 ONL GTGACACCTG (6) 5.7 0.0057 ONL TACTACTTTG (2) 5.7 0.0057 ONL CGTGCAGGCA 1.9 0.0019 ONL GCTGCCACAC (4) 1.9 0.0019 ONL GGCCTGGCCT (4) 1.9 0.0019