Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.27913	2610016F04Rik	RIKEN cDNA 2610016F04 gene	14		66923
Gene Ontology	DNA binding | regulation of transcription, DNA-dependent
Human Homolog	PB1[polybromo 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 158 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAGGCAAAAC (40) 11.4 0.0114 P8 Cb GC GCTCCTCCCC (3) 9.8 0.0098 P8 Cb GC TCTCAAAAAA (22) 4.9 0.0049 P8 Cb GC AAATAAATAA (8) 3.3 0.0033 P8 Cb GC GCCGGGATTC (3) 3.3 0.0033 P8 Cb GC GCAGATGCCC (3) 1.6 0.0016 P8 Cb GC TATGTATCAT (3) 1.6 0.0016 Cb medulloblastoma GCTCCTCCCC (3) 9.2 0.0092 Cb medulloblastoma TCTCAAAAAA (22) 9.2 0.0092 Cb medulloblastoma AAATAAATAA (8) 4.6 0.0046 Cb medulloblastoma CAGGCAAAAC (40) 4.6 0.0046 Cb medulloblastoma AAAAAAATTA (6) 2.3 0.0023 Cb medulloblastoma AAGGCAAAAA (3) 2.3 0.0023 Cb medulloblastoma GCCGGGATTC (3) 2.3 0.0023 P8 GC+1d culture GCTCCTCCCC (3) 6.8 0.0068 P8 GC+1d culture CAGGCAAAAC (40) 5.7 0.0057 P8 GC+1d culture TATGTATCAT (3) 5.7 0.0057 P8 GC+1d culture AAATAAATAA (8) 3.4 0.0034 P8 GC+1d culture TCTCAAAAAA (22) 3.4 0.0034 P8 GC+1d culture CATTAATTTT (2) 2.3 0.0023 P8 GC+1d culture GCTTCTCCCA (6) 2.3 0.0023 P8 GC+1d culture AAAAAAATTA (6) 1.1 0.0011 P8 GC+1d culture ATTCTAACAC (2) 1.1 0.0011 P8 GC+1d culture CTGTTCTTAA 1.1 0.0011 P8 GC+1d culture GCAGATGCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture CAGGCAAAAC (40) 11.7 0.0117 P8 GC+SHH+1d culture AAATAAATAA (8) 9.4 0.0094 P8 GC+SHH+1d culture GCTCCTCCCC (3) 7 0.007 P8 GC+SHH+1d culture TATGTATCAT (3) 7 0.007 P8 GC+SHH+1d culture TCTCAAAAAA (22) 3.5 0.0035 P8 GC+SHH+1d culture AGAACAAAGA (3) 2.3 0.0023 P8 GC+SHH+1d culture AGAACAAAAG (7) 1.2 0.0012 P8 GC+SHH+1d culture CATTAATTTT (2) 1.2 0.0012 P8 GC+SHH+1d culture GCTTCTCCCA (6) 1.2 0.0012 P8 GC+SHH+1d culture TTTTAAAATG (2) 1.2 0.0012 3T3 fibroblasts CAGGCAAAAC (40) 10.5 0.0105 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts GCTCCTCCCC (3) 7 0.007 3T3 fibroblasts AGTCATCAGG 3.5 0.0035 3T3 fibroblasts GCCGGGATTC (3) 3.5 0.0035 E15 cortex AGTCATCAGG 9.9 0.0099 E15 cortex GCTCCTCCCC (3) 9.9 0.0099 E15 cortex AAGGCAAAAA (3) 4.9 0.0049 E15 cortex CAGGCAAAAC (40) 4.9 0.0049 E15 cortex CATTAATTTT (2) 4.9 0.0049 E15 cortex GTCATAGCTG (590) 4.9 0.0049 P1 cortex CAGGCAAAAC (40) 9.1 0.0091 P1 cortex GCCGGGATTC (3) 9.1 0.0091 P1 cortex AAAAAAATTA (6) 4.5 0.0045 P1 cortex AAGGCAAAAA (3) 4.5 0.0045 P1 cortex AGTCATCAGG 4.5 0.0045 P1 cortex GCTCCTCCCC (3) 4.5 0.0045 P1 cortex TATGTATCAT (3) 4.5 0.0045 P1 cortex TCTCAAGAAA 4.5 0.0045 Hypothalamus AAATAAATAA (8) 10.9 0.0109 Hypothalamus CAGGCAAAAC (40) 5.4 0.0054 Hypothalamus TCTCAAAAAA (22) 5.4 0.0054 Hypothalamus AAGGCAAAAA (3) 3.6 0.0036 Hypothalamus AGAACAAAGA (3) 1.8 0.0018 Hypothalamus ATTCTAACAC (2) 1.8 0.0018 Hypothalamus CTGTTCTTAA 1.8 0.0018 Hypothalamus GCTCCTCCCC (3) 1.8 0.0018 Hypothalamus TATGTATCAT (3) 1.8 0.0018 E12.5 retina CAGGCAAAAC (40) 20.7 0.0207 E12.5 retina GCTCCTCCCC (3) 16.9 0.0169 E12.5 retina AAATAAATAA (8) 7.5 0.0075 E12.5 retina TATGTATCAT (3) 7.5 0.0075 E12.5 retina GCCGGGATTC (3) 3.8 0.0038 E12.5 retina ATTCTAACAC (2) 1.9 0.0019 E12.5 retina CTGTTCTTAA 1.9 0.0019 E12.5 retina TCTCAAGAAA 1.9 0.0019 E14.5 retina CAGGCAAAAC (40) 12.8 0.0128 E14.5 retina AAATAAATAA (8) 10.9 0.0109 E14.5 retina GCTCCTCCCC (3) 5.5 0.0055 E14.5 retina GCCGGGATTC (3) 3.6 0.0036 E14.5 retina TATGTATCAT (3) 3.6 0.0036 E14.5 retina TCTCAAAAAA (22) 3.6 0.0036 E14.5 retina AAAAAAATTA (6) 1.8 0.0018 E14.5 retina AAGGCAAAAA (3) 1.8 0.0018 E14.5 retina AGAACAAAAG (7) 1.8 0.0018 E14.5 retina AGAACAAAGA (3) 1.8 0.0018 E14.5 retina GCTTCTCCCA (6) 1.8 0.0018 E16.5 retina CAGGCAAAAC (40) 9.1 0.0091 E16.5 retina GCTCCTCCCC (3) 9.1 0.0091 E16.5 retina TATGTATCAT (3) 5.4 0.0054 E16.5 retina GCTTCTCCCA (6) 3.6 0.0036 E16.5 retina TCTCAAAAAA (22) 3.6 0.0036 E16.5 retina AAATAAATAA (8) 1.8 0.0018 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E18.5 retina AAATAAATAA (8) 18.2 0.0182 E18.5 retina CAGGCAAAAC (40) 12.7 0.0127 E18.5 retina TCTCAAAAAA (22) 5.5 0.0055 E18.5 retina ATTCTAACAC (2) 3.6 0.0036 E18.5 retina TATGTATCAT (3) 3.6 0.0036 E18.5 retina AAGGCAAAAA (3) 1.8 0.0018 E18.5 retina GCCGGGATTC (3) 1.8 0.0018 E18.5 retina GCTCCTCCCC (3) 1.8 0.0018 P0.5 retina CAGGCAAAAC (40) 13.7 0.0137 P0.5 retina GCTCCTCCCC (3) 7.9 0.0079 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina AAATAAATAA (8) 2 0.002 P0.5 retina AAGGCAAAAA (3) 2 0.002 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina GCAGATGCCC (3) 2 0.002 P0.5 retina TTTTAAAATG (2) 2 0.002 P2.5 retina CAGGCAAAAC (40) 24.6 0.0246 P2.5 retina GCCGGGATTC (3) 8.8 0.0088 P2.5 retina GCTCCTCCCC (3) 7 0.007 P2.5 retina AAATAAATAA (8) 3.5 0.0035 P2.5 retina AAGGCAAAAA (3) 3.5 0.0035 P2.5 retina AAAAAAATTA (6) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TCTCAAAAAA (22) 1.8 0.0018 P4.5 retina CAGGCAAAAC (40) 13.9 0.0139 P4.5 retina AAATAAATAA (8) 7.9 0.0079 P4.5 retina GCTCCTCCCC (3) 7.9 0.0079 P4.5 retina TATGTATCAT (3) 4 0.004 P4.5 retina ATTCTAACAC (2) 2 0.002 P4.5 retina CATTAATTTT (2) 2 0.002 P4.5 retina GCAGATGCCC (3) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TCTCAAAAAA (22) 2 0.002 P6.5 retina CAGGCAAAAC (40) 16.7 0.0167 P6.5 retina GCTCCTCCCC (3) 6.7 0.0067 P6.5 retina AAATAAATAA (8) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina TCTCAAAAAA (22) 3.3 0.0033 P6.5 retina AGAACAAAAG (7) 1.7 0.0017 P6.5 retina TCTCAAGAAA 1.7 0.0017 P6.5 retina TTTTAAAATG (2) 1.7 0.0017 P10.5 crx- retina CAGGCAAAAC (40) 11.1 0.0111 P10.5 crx- retina GCTCCTCCCC (3) 11.1 0.0111 P10.5 crx- retina AAATAAATAA (8) 3.7 0.0037 P10.5 crx- retina CTGTTCTTAA 3.7 0.0037 P10.5 crx- retina AGAACAAAAG (7) 1.9 0.0019 P10.5 crx- retina TATGTATCAT (3) 1.9 0.0019 P10.5 crx- retina TCTCAAGAAA 1.9 0.0019 P10.5 crx+ retina CAGGCAAAAC (40) 13.5 0.0135 P10.5 crx+ retina GCTCCTCCCC (3) 11.5 0.0115 P10.5 crx+ retina AAATAAATAA (8) 3.8 0.0038 P10.5 crx+ retina GCCGGGATTC (3) 3.8 0.0038 P10.5 crx+ retina TCTCAAAAAA (22) 3.8 0.0038 P10.5 crx+ retina CTGTTCTTAA 1.9 0.0019 P10.5 crx+ retina TATGTATCAT (3) 1.9 0.0019 Adult retinal CAGGCAAAAC (40) 11.1 0.0111 Adult retinal TCTCAAAAAA (22) 7.4 0.0074 Adult retinal GCTCCTCCCC (3) 5.6 0.0056 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal AGTCATCAGG 1.9 0.0019 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL CAGGCAAAAC (40) 34.5 0.0345 ONL AAATAAATAA (8) 26.8 0.0268 ONL TCTCAAAAAA (22) 7.7 0.0077 ONL GTCATAGCTG (590) 5.7 0.0057 ONL GCTCCTCCCC (3) 1.9 0.0019 ONL TATGTATCAT (3) 1.9 0.0019 ONL TCTCAAGAAA 1.9 0.0019 ONL TTTTAAAATG (2) 1.9 0.0019