Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279690	Ptn	pleiotrophin	6	6 13.5 cM	19242
Gene Ontology	bone mineralization | cell proliferation | extracellular matrix | extracellular space | growth factor activity | heparin binding | learning | ossification | regulation of cell cycle
Human Homolog	PTN[pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 111 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC TTTCAATCTT 32.6 0.0326 P8 Cb GC TAAACTACTT 26.1 0.0261 P8 Cb GC AAATCCTTTC (5) 22.8 0.0228 P8 Cb GC ATAGGCAAAA 9.8 0.0098 P8 Cb GC AAGACTCAGA (4) 6.5 0.0065 P8 Cb GC AGAAAGAAAA (8) 3.3 0.0033 P8 Cb GC GCGGCTAGTT 3.3 0.0033 P8 Cb GC TTCCAATCTT (3) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma AAATCCTTTC (5) 9.2 0.0092 Cb medulloblastoma TTTCAATCTT 9.2 0.0092 Cb medulloblastoma AGAAAGAAAA (8) 6.9 0.0069 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture TTTCAATCTT 43.4 0.0434 P8 GC+1d culture TAAACTACTT 42.2 0.0422 P8 GC+1d culture AAATCCTTTC (5) 30.8 0.0308 P8 GC+1d culture ATAGGCAAAA 12.6 0.0126 P8 GC+1d culture AAAACTCACA (2) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture TTTCAATCTT 26.9 0.0269 P8 GC+SHH+1d culture TAAACTACTT 19.9 0.0199 P8 GC+SHH+1d culture AAATCCTTTC (5) 17.6 0.0176 P8 GC+SHH+1d culture ATAGGCAAAA 14.1 0.0141 P8 GC+SHH+1d culture AAAACTCACA (2) 1.2 0.0012 P8 GC+SHH+1d culture AGAAAGAAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture GCGGCTAGTT 1.2 0.0012 3T3 fibroblasts AAATCCTTTC (5) 31.5 0.0315 3T3 fibroblasts AAGACTCAGA (4) 24.5 0.0245 3T3 fibroblasts ATAGGCAAAA 14 0.014 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts TAAACTACTT 3.5 0.0035 3T3 fibroblasts TTTCAATCTT 3.5 0.0035 E15 cortex AAATCCTTTC (5) 19.8 0.0198 E15 cortex AAGACTCAGA (4) 19.8 0.0198 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 P1 cortex AAATCCTTTC (5) 50 0.05 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex TAAACTACTT 18.2 0.0182 P1 cortex ATAGGCAAAA 13.6 0.0136 P1 cortex AGAAAGAAAA (8) 9.1 0.0091 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus ATAGGCAAAA 12.7 0.0127 Hypothalamus TAAACTACTT 12.7 0.0127 Hypothalamus TTTCAATCTT 7.2 0.0072 Hypothalamus AAATCCTTTC (5) 1.8 0.0018 Hypothalamus AGAAAGAAAA (8) 1.8 0.0018 Hypothalamus TTCCAATCTT (3) 1.8 0.0018 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina AAATCCTTTC (5) 15 0.015 E12.5 retina ATAGGCAAAA 3.8 0.0038 E12.5 retina AAGACTCACA (6) 1.9 0.0019 E12.5 retina AGAAAGAAAA (8) 1.9 0.0019 E12.5 retina TTTCAATCTT 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina AAATCCTTTC (5) 9.1 0.0091 E14.5 retina TTTCAATCTT 9.1 0.0091 E14.5 retina TAAACTACTT 3.6 0.0036 E14.5 retina AAGACTCACA (6) 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina AAATCCTTTC (5) 5.4 0.0054 E16.5 retina TAAACTACTT 1.8 0.0018 E16.5 retina TTTCAATCTT 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina AAATCCTTTC (5) 9.1 0.0091 E18.5 retina AGAAAGAAAA (8) 5.5 0.0055 E18.5 retina ATAGGCAAAA 5.5 0.0055 E18.5 retina TTTCAATCTT 5.5 0.0055 E18.5 retina TAAACTACTT 3.6 0.0036 E18.5 retina TTCCAATCTT (3) 3.6 0.0036 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina TAAACTACTT 9.8 0.0098 P0.5 retina AAATCCTTTC (5) 3.9 0.0039 P0.5 retina AAGACTCACA (6) 2 0.002 P0.5 retina AGAAAGAAAA (8) 2 0.002 P0.5 retina TTTCAATCTT 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina AAATCCTTTC (5) 10.6 0.0106 P2.5 retina TAAACTACTT 5.3 0.0053 P2.5 retina AGAAAGAAAA (8) 3.5 0.0035 P2.5 retina TTTCAATCTT 3.5 0.0035 P2.5 retina ATAGGCAAAA 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina AAATCCTTTC (5) 5.9 0.0059 P4.5 retina AGAAAGAAAA (8) 5.9 0.0059 P4.5 retina ATAGGCAAAA 5.9 0.0059 P4.5 retina TAAACTACTT 5.9 0.0059 P4.5 retina TTTCAATCTT 5.9 0.0059 P4.5 retina AAGACTCACA (6) 2 0.002 P4.5 retina TTCCAATCTT (3) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina AAATCCTTTC (5) 6.7 0.0067 P6.5 retina TAAACTACTT 6.7 0.0067 P6.5 retina AGAAAGAAAA (8) 5 0.005 P6.5 retina ATAGGCAAAA 3.3 0.0033 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina AAATCCTTTC (5) 7.4 0.0074 P10.5 crx- retina AAGACTCAGA (4) 1.9 0.0019 P10.5 crx- retina TTCCAATCTT (3) 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina TAAACTACTT 5.8 0.0058 P10.5 crx+ retina AAGACTCACA (6) 3.8 0.0038 P10.5 crx+ retina TTTCAATCTT 3.8 0.0038 P10.5 crx+ retina AAATCCTTTC (5) 1.9 0.0019 P10.5 crx+ retina ATAGGCAAAA 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal AAGACTCACA (6) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL AAGACTCACA (6) 3.8 0.0038 ONL TAAACTACTT 1.9 0.0019 ONL TTCCAATCTT (3) 1.9 0.0019