Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.279736	A430105D02Rik	RIKEN cDNA A430105D02 gene	1		77188
Mm.279736	Sf3b1	splicing factor 3b, subunit 1	1	1 28.9 cM	81898
Gene Ontology	mRNA processing | nuclear mRNA splicing, via spliceosome | nucleus | pre-mRNA splicing factor activity | spliceosome complex
Human Homolog	SF3B1[splicing factor 3b, subunit 1, 155kDa]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 91 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATTTTTAAAA (13) 4.9 0.0049 P8 Cb GC CAAACTGAAG (3) 4.9 0.0049 P8 Cb GC ATTTTTAAAT (5) 3.3 0.0033 P8 Cb GC CAGAATGTTG (4) 1.6 0.0016 P8 Cb GC TTCTTAAGGG (3) 1.6 0.0016 P8 Cb GC TTTTGTATAG (4) 1.6 0.0016 Cb medulloblastoma ATTTTTAAAA (13) 11.6 0.0116 Cb medulloblastoma CAAACTGAAG (3) 2.3 0.0023 Cb medulloblastoma CAGGACGCAC (3) 2.3 0.0023 P8 GC+1d culture ATTTTTAAAA (13) 14.8 0.0148 P8 GC+1d culture ATTTTTAAAT (5) 3.4 0.0034 P8 GC+1d culture CAAACTGAAG (3) 1.1 0.0011 P8 GC+1d culture CAGAATGTTG (4) 1.1 0.0011 P8 GC+1d culture TAACGGAAGG (2) 1.1 0.0011 P8 GC+SHH+1d culture ATTTTTAAAA (13) 5.9 0.0059 P8 GC+SHH+1d culture ATTTTTAAAT (5) 2.3 0.0023 P8 GC+SHH+1d culture GGACATTACC (3) 2.3 0.0023 P8 GC+SHH+1d culture CAAACTGAAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TTCTTAAGGG (3) 1.2 0.0012 3T3 fibroblasts GTCATAGCTG (590) 10.5 0.0105 3T3 fibroblasts CAAACTGAAG (3) 7 0.007 E15 cortex CAAACTGAAG (3) 19.8 0.0198 E15 cortex GTCATAGCTG (590) 4.9 0.0049 E15 cortex TGGAAACCAG (5) 4.9 0.0049 P1 cortex ATTTTTAAAA (13) 13.6 0.0136 P1 cortex CAAACTGAAG (3) 13.6 0.0136 P1 cortex TTCTTAAGGG (3) 4.5 0.0045 Hypothalamus ATTTTTAAAA (13) 16.3 0.0163 Hypothalamus ATTTTTAAAT (5) 3.6 0.0036 Hypothalamus CAGATGATGC (6) 3.6 0.0036 Hypothalamus CTACTGGATT (4) 1.8 0.0018 Hypothalamus TTCTTAAGGG (3) 1.8 0.0018 E12.5 retina ATTTTTAAAA (13) 7.5 0.0075 E12.5 retina CAAACTGAAG (3) 3.8 0.0038 E12.5 retina TTCTTAAGGG (3) 1.9 0.0019 E14.5 retina CAGATGATGC (6) 12.8 0.0128 E14.5 retina ATTTTTAAAT (5) 3.6 0.0036 E14.5 retina CAAACTGAAG (3) 3.6 0.0036 E14.5 retina ATTTTTAAAA (13) 1.8 0.0018 E16.5 retina CAGATGATGC (6) 5.4 0.0054 E16.5 retina CAAACTGAAG (3) 3.6 0.0036 E16.5 retina CTACTGGATT (4) 1.8 0.0018 E16.5 retina TTCTTAAGGG (3) 1.8 0.0018 E16.5 retina TTTTGTATAG (4) 1.8 0.0018 E18.5 retina ATTTTTAAAA (13) 7.3 0.0073 E18.5 retina CAAACTGAAG (3) 1.8 0.0018 E18.5 retina CAGATGATGC (6) 1.8 0.0018 E18.5 retina TTCTTAAGGG (3) 1.8 0.0018 P0.5 retina ATTTTTAAAA (13) 5.9 0.0059 P0.5 retina GTCATAGCTG (590) 3.9 0.0039 P0.5 retina CAGATGATGC (6) 2 0.002 P0.5 retina CAGGACGCAC (3) 2 0.002 P0.5 retina CTACTGGATT (4) 2 0.002 P2.5 retina ATTTTTAAAA (13) 3.5 0.0035 P2.5 retina CAGATGATGC (6) 3.5 0.0035 P2.5 retina CAAACTGAAG (3) 1.8 0.0018 P2.5 retina CAGGACGCAC (3) 1.8 0.0018 P2.5 retina GGACATTACC (3) 1.8 0.0018 P2.5 retina GTCATAGCTG (590) 1.8 0.0018 P2.5 retina TAACGGAAGG (2) 1.8 0.0018 P2.5 retina TTCTTAAGGG (3) 1.8 0.0018 P4.5 retina CAAACTGAAG (3) 4 0.004 P4.5 retina CAGAATGTTG (4) 4 0.004 P4.5 retina TTCTTAAGGG (3) 4 0.004 P4.5 retina ATTTTTAAAA (13) 2 0.002 P4.5 retina CTACTGGATT (4) 2 0.002 P4.5 retina GTCATAGCTG (590) 2 0.002 P4.5 retina TGGAAACCAG (5) 2 0.002 P4.5 retina TTTTGTATAG (4) 2 0.002 P6.5 retina ATTTTTAAAA (13) 8.3 0.0083 P6.5 retina CAAACTGAAG (3) 5 0.005 P6.5 retina GGACATTACC (3) 3.3 0.0033 P6.5 retina GTCATAGCTG (590) 3.3 0.0033 P6.5 retina CAGAATGTTG (4) 1.7 0.0017 P6.5 retina CAGGACGCAC (3) 1.7 0.0017 P6.5 retina TTCTTAAGGG (3) 1.7 0.0017 P10.5 crx- retina ATTTTTAAAA (13) 5.6 0.0056 P10.5 crx- retina ATTTTTAAAT (5) 3.7 0.0037 P10.5 crx- retina CAGAATGTTG (4) 1.9 0.0019 P10.5 crx- retina CAGGACGCAC (3) 1.9 0.0019 P10.5 crx- retina TAACGGAAGG (2) 1.9 0.0019 P10.5 crx+ retina ATTTTTAAAA (13) 3.8 0.0038 P10.5 crx+ retina CAGAATGTTG (4) 1.9 0.0019 P10.5 crx+ retina GGACATTACC (3) 1.9 0.0019 P10.5 crx+ retina TGGAAACCAG (5) 1.9 0.0019 Adult retinal ATTTTTAAAA (13) 9.3 0.0093 Adult retinal ATTTTTAAAT (5) 3.7 0.0037 Adult retinal GGACATTACC (3) 3.7 0.0037 Adult retinal GTCATAGCTG (590) 1.9 0.0019 ONL ATTTTTAAAA (13) 9.6 0.0096 ONL GTCATAGCTG (590) 5.7 0.0057