Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.280103	Atp1a1	ATPase, Na+/K+ transporting, alpha 1 polypeptide	3	3 48.4 cM	11928
Gene Ontology	ATP binding | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | catalytic activity | cation transport | cation-transporting ATPase activity | hydrolase activity | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | integral to membrane | magnesium ion binding | membrane | metabolism | monovalent inorganic cation transport | monovalent inorganic cation transporter activity | plasma membrane | potassium ion transport | sodium ion transport | sodium/potassium-exchanging ATPase activity
Human Homolog	ATP1A1[ATPase, Na+/K+ transporting, alpha 1 polypeptide]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 215 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAGCTGTAAC 6.5 0.0065 P8 Cb GC GGGAAGGGGG (23) 4.9 0.0049 P8 Cb GC GTGAAAAAAA (22) 4.9 0.0049 P8 Cb GC GGGGCAGCCC (5) 3.3 0.0033 P8 Cb GC GTGACAAAAA (11) 3.3 0.0033 P8 Cb GC GTGGTTCTGT (4) 3.3 0.0033 P8 Cb GC GAGCAGAAAT (5) 1.6 0.0016 P8 Cb GC GCCGCCCTCC (2) 1.6 0.0016 P8 Cb GC GCCTATGGAC (3) 1.6 0.0016 P8 Cb GC GCTATGGAGA (8) 1.6 0.0016 P8 Cb GC GTTCCTGCCA (3) 1.6 0.0016 P8 Cb GC TGGGAGCAAC (4) 1.6 0.0016 P8 Cb GC TGTGTGTATG (18) 1.6 0.0016 Cb medulloblastoma GTGAAAAAAA (22) 43.9 0.0439 Cb medulloblastoma TAGCTGTAAC 39.3 0.0393 Cb medulloblastoma GTGAAAACAA (4) 27.7 0.0277 Cb medulloblastoma GGGAAGGGGG (23) 13.9 0.0139 Cb medulloblastoma GCCTATGGAC (3) 4.6 0.0046 Cb medulloblastoma GTGACAAAAA (11) 4.6 0.0046 Cb medulloblastoma GCCGCCCTCC (2) 2.3 0.0023 Cb medulloblastoma GGTGACAAAA (2) 2.3 0.0023 Cb medulloblastoma GTCAGAGACC (5) 2.3 0.0023 Cb medulloblastoma GTGGTTCTGT (4) 2.3 0.0023 P8 GC+1d culture TAGCTGTAAC 28.5 0.0285 P8 GC+1d culture GGGGCAGCCC (5) 19.4 0.0194 P8 GC+1d culture GTGAAAAAAA (22) 6.8 0.0068 P8 GC+1d culture GCCGCCCTCC (2) 5.7 0.0057 P8 GC+1d culture GCTATGGAGA (8) 5.7 0.0057 P8 GC+1d culture CTTTGGTGCT (5) 4.6 0.0046 P8 GC+1d culture GGGAAGGGGG (23) 4.6 0.0046 P8 GC+1d culture ATTTCTGCAT (2) 2.3 0.0023 P8 GC+1d culture GCCTATGGAC (3) 2.3 0.0023 P8 GC+1d culture GTCAGAGACC (5) 2.3 0.0023 P8 GC+1d culture TGTGTGTATG (18) 2.3 0.0023 P8 GC+1d culture ACTCTCCAGT (2) 1.1 0.0011 P8 GC+1d culture AGGTGACTTG (4) 1.1 0.0011 P8 GC+1d culture GAGCAGAAAT (5) 1.1 0.0011 P8 GC+1d culture GCGAGGACAG (6) 1.1 0.0011 P8 GC+1d culture GGGGTTCTGT (3) 1.1 0.0011 P8 GC+1d culture GTGACAAAAC (4) 1.1 0.0011 P8 GC+1d culture GTTCCTGCCA (3) 1.1 0.0011 P8 GC+SHH+1d culture TAGCTGTAAC 24.6 0.0246 P8 GC+SHH+1d culture GGGGCAGCCC (5) 10.5 0.0105 P8 GC+SHH+1d culture GTGAAAAAAA (22) 10.5 0.0105 P8 GC+SHH+1d culture GCTATGGAGA (8) 9.4 0.0094 P8 GC+SHH+1d culture GTGAAAACAA (4) 4.7 0.0047 P8 GC+SHH+1d culture CTTTGGTGCT (5) 2.3 0.0023 P8 GC+SHH+1d culture GAGCAGAAAT (5) 2.3 0.0023 P8 GC+SHH+1d culture GCCGCCCTCC (2) 2.3 0.0023 P8 GC+SHH+1d culture GGGAAGGGGG (23) 2.3 0.0023 P8 GC+SHH+1d culture GTGACAAAAA (11) 1.2 0.0012 3T3 fibroblasts TAGCTGTAAC 7 0.007 3T3 fibroblasts GCCGCCCTCC (2) 3.5 0.0035 3T3 fibroblasts GGGGCAGCCC (5) 3.5 0.0035 3T3 fibroblasts TGGGAGCAAC (4) 3.5 0.0035 E15 cortex GGGGCAGCCC (5) 29.7 0.0297 E15 cortex GGGAAGGGGG (23) 14.8 0.0148 E15 cortex ACTCTCCAGT (2) 4.9 0.0049 E15 cortex GAAGCTGAAC (2) 4.9 0.0049 E15 cortex GCGAGGAAGA (2) 4.9 0.0049 E15 cortex GCTATGGAGA (8) 4.9 0.0049 E15 cortex GTGACAAAAC (4) 4.9 0.0049 E15 cortex TTTTGGTGGT (12) 4.9 0.0049 P1 cortex GGGAAGGGGG (23) 9.1 0.0091 P1 cortex GGGGCAGCCC (5) 9.1 0.0091 P1 cortex GAAGCTGAAC (2) 4.5 0.0045 P1 cortex GCGAGGAAGA (2) 4.5 0.0045 P1 cortex GCGAGGACAG (6) 4.5 0.0045 Hypothalamus GTGAAAAAAA (22) 18.1 0.0181 Hypothalamus GGGGCAGCCC (5) 16.3 0.0163 Hypothalamus TAGCTGTAAC 9.1 0.0091 Hypothalamus GCGAGGAAGA (2) 7.2 0.0072 Hypothalamus GCCGCCCTCC (2) 5.4 0.0054 Hypothalamus GCCTTCTTCT (5) 3.6 0.0036 Hypothalamus GGGAAGGGGG (23) 3.6 0.0036 Hypothalamus ATTTCTGCAT (2) 1.8 0.0018 Hypothalamus GCTATGGAGA (8) 1.8 0.0018 Hypothalamus GTGGTTCTGT (4) 1.8 0.0018 Hypothalamus TGTGTGTATG (18) 1.8 0.0018 E12.5 retina GTGAAAAAAA (22) 11.3 0.0113 E12.5 retina GCTATGGAGA (8) 7.5 0.0075 E12.5 retina AGGTGACTTG (4) 5.6 0.0056 E12.5 retina ATTTCTGCAT (2) 5.6 0.0056 E12.5 retina GTGACAAAAA (11) 5.6 0.0056 E12.5 retina GCGAGGACAG (6) 3.8 0.0038 E12.5 retina GGGAGGGGAA (2) 3.8 0.0038 E12.5 retina TAGCTGTAAC 3.8 0.0038 E12.5 retina ACTCTCCAGT (2) 1.9 0.0019 E12.5 retina GGGAAGGGGG (23) 1.9 0.0019 E12.5 retina GGTGACAAAA (2) 1.9 0.0019 E12.5 retina GTGAAAACAA (4) 1.9 0.0019 E12.5 retina GTGACAAAAC (4) 1.9 0.0019 E12.5 retina TTTTGGTGGT (12) 1.9 0.0019 E14.5 retina GCTATGGAGA (8) 20 0.02 E14.5 retina GTGAAAAAAA (22) 12.8 0.0128 E14.5 retina GAAGCTGAAC (2) 7.3 0.0073 E14.5 retina GAGCAGAAAT (5) 3.6 0.0036 E14.5 retina GTGAAAACAA (4) 3.6 0.0036 E14.5 retina GCAGGGGGGG (5) 1.8 0.0018 E14.5 retina GCCTTCTTCT (5) 1.8 0.0018 E14.5 retina GGGAAGGGGG (23) 1.8 0.0018 E14.5 retina GGGGCAGCCC (5) 1.8 0.0018 E14.5 retina GTGACAAAAA (11) 1.8 0.0018 E14.5 retina GTTACAGGAG (4) 1.8 0.0018 E14.5 retina GTTCCTGCCA (3) 1.8 0.0018 E14.5 retina TAGCTGTAAC 1.8 0.0018 E16.5 retina GCTATGGAGA (8) 5.4 0.0054 E16.5 retina GTGAAAAAAA (22) 5.4 0.0054 E16.5 retina GGGGCAGCCC (5) 3.6 0.0036 E16.5 retina GTTACAGGAG (4) 3.6 0.0036 E16.5 retina TGTGTGTATG (18) 3.6 0.0036 E16.5 retina AGGTGACTTG (4) 1.8 0.0018 E16.5 retina GAAGCTGAAC (2) 1.8 0.0018 E16.5 retina GCCGCCCTCC (2) 1.8 0.0018 E16.5 retina GCCTTCTTCT (5) 1.8 0.0018 E16.5 retina GCGAGGACAG (6) 1.8 0.0018 E16.5 retina GGGAAGGGGG (23) 1.8 0.0018 E16.5 retina GGGAGGGGAA (2) 1.8 0.0018 E16.5 retina GTGAAAACAA (4) 1.8 0.0018 E18.5 retina GTGAAAAAAA (22) 20 0.02 E18.5 retina GCTATGGAGA (8) 18.2 0.0182 E18.5 retina GGGGCAGCCC (5) 7.3 0.0073 E18.5 retina GCGACAAAAA 3.6 0.0036 E18.5 retina GCGAGGACAG (6) 3.6 0.0036 E18.5 retina GTGAAAACAA (4) 3.6 0.0036 E18.5 retina GCCGCCCTCC (2) 1.8 0.0018 E18.5 retina GTCAGAGACC (5) 1.8 0.0018 E18.5 retina TGTGTGTATG (18) 1.8 0.0018 P0.5 retina GCTATGGAGA (8) 13.7 0.0137 P0.5 retina TAGCTGTAAC 9.8 0.0098 P0.5 retina GTGAAAAAAA (22) 7.9 0.0079 P0.5 retina GGGGCAGCCC (5) 5.9 0.0059 P0.5 retina GCCGCCCTCC (2) 3.9 0.0039 P0.5 retina AGGTGACTTG (4) 2 0.002 P0.5 retina ATTTCTGCAT (2) 2 0.002 P0.5 retina GAGCAGAAAT (5) 2 0.002 P0.5 retina GCGAGGACAG (6) 2 0.002 P0.5 retina GGGAAGGGGG (23) 2 0.002 P0.5 retina GTCAGAGACC (5) 2 0.002 P2.5 retina GCTATGGAGA (8) 17.6 0.0176 P2.5 retina GTGAAAAAAA (22) 10.6 0.0106 P2.5 retina GCAGGGGGGG (5) 5.3 0.0053 P2.5 retina GGGAAGGGGG (23) 5.3 0.0053 P2.5 retina GGGGCAGCCC (5) 5.3 0.0053 P2.5 retina GTCAGAGACC (5) 5.3 0.0053 P2.5 retina GGGAGGGGAA (2) 3.5 0.0035 P2.5 retina GTGAAAACAA (4) 3.5 0.0035 P2.5 retina ATTTCTGCAT (2) 1.8 0.0018 P2.5 retina GAAGCTGAAC (2) 1.8 0.0018 P2.5 retina GCCGCCCTCC (2) 1.8 0.0018 P2.5 retina GCGACAAAAA 1.8 0.0018 P2.5 retina GCGAGGACAG (6) 1.8 0.0018 P2.5 retina GGGGTTCTGT (3) 1.8 0.0018 P2.5 retina GTGACAAAAA (11) 1.8 0.0018 P2.5 retina TAGCTGTAAC 1.8 0.0018 P4.5 retina GTGAAAAAAA (22) 23.8 0.0238 P4.5 retina GCTATGGAGA (8) 19.8 0.0198 P4.5 retina GCCGCCCTCC (2) 7.9 0.0079 P4.5 retina GGGAAGGGGG (23) 7.9 0.0079 P4.5 retina GGGGCAGCCC (5) 7.9 0.0079 P4.5 retina GTGAAAACAA (4) 7.9 0.0079 P4.5 retina ATTTCTGCAT (2) 5.9 0.0059 P4.5 retina GTGACAAAAA (11) 5.9 0.0059 P4.5 retina GCGAGGACAG (6) 4 0.004 P4.5 retina TAGCTGTAAC 4 0.004 P4.5 retina GTCAGAGACC (5) 2 0.002 P6.5 retina GGGAAGGGGG (23) 15 0.015 P6.5 retina GGGGCAGCCC (5) 11.7 0.0117 P6.5 retina GCTATGGAGA (8) 10 0.01 P6.5 retina GTGAAAACAA (4) 6.7 0.0067 P6.5 retina TAGCTGTAAC 6.7 0.0067 P6.5 retina GTGAAAAAAA (22) 5 0.005 P6.5 retina GCGAGGACAG (6) 3.3 0.0033 P6.5 retina GCCGCCCTCC (2) 1.7 0.0017 P10.5 crx- retina TAGCTGTAAC 13 0.013 P10.5 crx- retina GGGAAGGGGG (23) 11.1 0.0111 P10.5 crx- retina GGGGCAGCCC (5) 9.3 0.0093 P10.5 crx- retina GCTATGGAGA (8) 5.6 0.0056 P10.5 crx- retina TGATGGGTAC (4) 5.6 0.0056 P10.5 crx- retina GTGAAAAAAA (22) 3.7 0.0037 P10.5 crx- retina AGGTGACTTG (4) 1.9 0.0019 P10.5 crx- retina ATTTCTGCAT (2) 1.9 0.0019 P10.5 crx- retina GAAGCTGAAC (2) 1.9 0.0019 P10.5 crx- retina GCGAGGACAG (6) 1.9 0.0019 P10.5 crx- retina GGGGTTCTGT (3) 1.9 0.0019 P10.5 crx+ retina GGGAAGGGGG (23) 11.5 0.0115 P10.5 crx+ retina TAGCTGTAAC 7.7 0.0077 P10.5 crx+ retina GCCGCCCTCC (2) 5.8 0.0058 P10.5 crx+ retina GTCAGAGACC (5) 5.8 0.0058 P10.5 crx+ retina GTGAAAAAAA (22) 5.8 0.0058 P10.5 crx+ retina GCTATGGAGA (8) 3.8 0.0038 P10.5 crx+ retina GTGAAAACAA (4) 3.8 0.0038 P10.5 crx+ retina AGGTGACTTG (4) 1.9 0.0019 P10.5 crx+ retina ATTTCTGCAT (2) 1.9 0.0019 P10.5 crx+ retina GGGGCAGCCC (5) 1.9 0.0019 P10.5 crx+ retina GTGACAAAAA (11) 1.9 0.0019 Adult retinal GGGAAGGGGG (23) 11.1 0.0111 Adult retinal GGGGCAGCCC (5) 9.3 0.0093 Adult retinal TAGCTGTAAC 7.4 0.0074 Adult retinal GCTATGGAGA (8) 5.6 0.0056 Adult retinal GTGAAAAAAA (22) 3.7 0.0037 Adult retinal ATTTCTGCAT (2) 1.9 0.0019 Adult retinal CTTTGGTGCT (5) 1.9 0.0019 Adult retinal GCCGCCCTCC (2) 1.9 0.0019 Adult retinal GGGAGGGGAA (2) 1.9 0.0019 Adult retinal GGTGACAAAA (2) 1.9 0.0019 Adult retinal GTCAGAGACC (5) 1.9 0.0019 ONL GAAGCTGAAC (2) 21.1 0.0211 ONL GTGAAAAAAA (22) 5.7 0.0057 ONL TAGCTGTAAC 5.7 0.0057 ONL AGGTGACTTG (4) 1.9 0.0019 ONL GCCGCCCTCC (2) 1.9 0.0019 ONL GGGAAGGGGG (23) 1.9 0.0019 ONL TGGGAGCAAC (4) 1.9 0.0019 ONL TGTGTGTATG (18) 1.9 0.0019