Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.283339	Prpf39	PRP39 pre-mRNA processing factor 39 homolog (yeast)	12		328110
Human Homolog	PRPF39[PRP39 pre-mRNA processing factor 39 homolog (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 99 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CAAAAAAAAA (157) 47.3 0.0473 P8 Cb GC ACACTTTTTG (3) 6.5 0.0065 P8 Cb GC ACAACATTAA (2) 1.6 0.0016 P8 Cb GC CAGCAAAAAA (5) 1.6 0.0016 P8 Cb GC CTCTGCCTTT 1.6 0.0016 P8 Cb GC GTGACATTTA (2) 1.6 0.0016 Cb medulloblastoma CAAAAAAAAA (157) 92.5 0.0925 Cb medulloblastoma ACACTTTTTG (3) 9.2 0.0092 Cb medulloblastoma CAGCAAAAAA (5) 2.3 0.0023 Cb medulloblastoma CCTTTCTGCG (3) 2.3 0.0023 P8 GC+1d culture CAAAAAAAAA (157) 37.7 0.0377 P8 GC+1d culture ACACTTTTTG (3) 8 0.008 P8 GC+1d culture AGCTGCAAAA (2) 1.1 0.0011 P8 GC+1d culture CCTTTCTGCG (3) 1.1 0.0011 P8 GC+SHH+1d culture CAAAAAAAAA (157) 58.5 0.0585 P8 GC+SHH+1d culture ACACTTTTTG (3) 5.9 0.0059 P8 GC+SHH+1d culture ACACTTTTAT (7) 1.2 0.0012 P8 GC+SHH+1d culture AGCTGCAAAA (2) 1.2 0.0012 P8 GC+SHH+1d culture CAGCAAAAAA (5) 1.2 0.0012 P8 GC+SHH+1d culture TGAAATCAAA 1.2 0.0012 E15 cortex CAAAAAAAAA (157) 34.6 0.0346 E15 cortex ACACTTTTTG (3) 4.9 0.0049 P1 cortex CAAAAAAAAA (157) 22.7 0.0227 P1 cortex ACACTTTTTG (3) 9.1 0.0091 Hypothalamus CAAAAAAAAA (157) 39.8 0.0398 Hypothalamus AGCTGCAAAA (2) 5.4 0.0054 Hypothalamus CCTTTCTGCG (3) 3.6 0.0036 Hypothalamus ACACTTTTTG (3) 1.8 0.0018 Hypothalamus CAGCAAAAAA (5) 1.8 0.0018 Hypothalamus GGGCTGGGAT (5) 1.8 0.0018 Hypothalamus TGAAATCAAA 1.8 0.0018 E12.5 retina CAAAAAAAAA (157) 22.5 0.0225 E12.5 retina ACAACATTAA (2) 3.8 0.0038 E12.5 retina ACACTTTTTG (3) 3.8 0.0038 E12.5 retina CAGCAAAAAA (5) 3.8 0.0038 E12.5 retina CCTTTCTGCG (3) 3.8 0.0038 E12.5 retina ACACTTTTAT (7) 1.9 0.0019 E12.5 retina GGGCTGGGAT (5) 1.9 0.0019 E12.5 retina TAAAACTTAT (2) 1.9 0.0019 E14.5 retina CAAAAAAAAA (157) 9.1 0.0091 E14.5 retina ACACTTTTAT (7) 5.5 0.0055 E14.5 retina AGCTGCAAAA (2) 3.6 0.0036 E14.5 retina CCTTTCTGCG (3) 3.6 0.0036 E14.5 retina CAGCAAAAAA (5) 1.8 0.0018 E14.5 retina CTCTGCCTTT 1.8 0.0018 E14.5 retina TACAAAATAA (7) 1.8 0.0018 E16.5 retina CAAAAAAAAA (157) 9.1 0.0091 E16.5 retina ACACTTTTAT (7) 3.6 0.0036 E16.5 retina ACACTTTTTG (3) 3.6 0.0036 E16.5 retina AGCTGCAAAA (2) 1.8 0.0018 E16.5 retina CCTTTCTGCG (3) 1.8 0.0018 E16.5 retina CTCTGCCTTT 1.8 0.0018 E16.5 retina GTGACATTTA (2) 1.8 0.0018 E18.5 retina CAAAAAAAAA (157) 41.8 0.0418 E18.5 retina CAGCAAAAAA (5) 7.3 0.0073 E18.5 retina ACACTTTTTG (3) 3.6 0.0036 E18.5 retina CCTTTCTGCG (3) 3.6 0.0036 E18.5 retina AGCTGCAAAA (2) 1.8 0.0018 E18.5 retina TAAAACTTAT (2) 1.8 0.0018 E18.5 retina TGAAATCAAA 1.8 0.0018 P0.5 retina CAAAAAAAAA (157) 137.4 0.1374 P0.5 retina ACACTTTTTG (3) 3.9 0.0039 P0.5 retina AGCTGCAAAA (2) 2 0.002 P0.5 retina CCTTTCTGCG (3) 2 0.002 P0.5 retina TAAAACTTAT (2) 2 0.002 P2.5 retina CAAAAAAAAA (157) 52.8 0.0528 P2.5 retina CCTTTCTGCG (3) 7 0.007 P2.5 retina ACACTTTTTG (3) 5.3 0.0053 P2.5 retina CAGCAAAAAA (5) 3.5 0.0035 P2.5 retina TAAAACTTAT (2) 3.5 0.0035 P2.5 retina TACAAAATAA (7) 3.5 0.0035 P4.5 retina CAAAAAAAAA (157) 41.6 0.0416 P4.5 retina ACACTTTTTG (3) 5.9 0.0059 P4.5 retina AGCTGCAAAA (2) 2 0.002 P4.5 retina TACAAAATAA (7) 2 0.002 P6.5 retina CAAAAAAAAA (157) 31.7 0.0317 P6.5 retina AGCTGCAAAA (2) 5 0.005 P6.5 retina CCTTTCTGCG (3) 3.3 0.0033 P6.5 retina CAGCAAAAAA (5) 1.7 0.0017 P10.5 crx- retina CAAAAAAAAA (157) 13 0.013 P10.5 crx- retina AGCTGCAAAA (2) 9.3 0.0093 P10.5 crx- retina ACACTTTTTG (3) 3.7 0.0037 P10.5 crx- retina CCTTTCTGCG (3) 3.7 0.0037 P10.5 crx- retina ACAACATTAA (2) 1.9 0.0019 P10.5 crx- retina CAGCAAAAAA (5) 1.9 0.0019 P10.5 crx- retina GTGACATTTA (2) 1.9 0.0019 P10.5 crx+ retina CAAAAAAAAA (157) 32.7 0.0327 P10.5 crx+ retina CCTTTCTGCG (3) 11.5 0.0115 P10.5 crx+ retina ACACTTTTTG (3) 9.6 0.0096 P10.5 crx+ retina AGCTGCAAAA (2) 5.8 0.0058 P10.5 crx+ retina CAGCAAAAAA (5) 1.9 0.0019 P10.5 crx+ retina GGGCTGGGAT (5) 1.9 0.0019 P10.5 crx+ retina GTGACATTTA (2) 1.9 0.0019 Adult retinal CAAAAAAAAA (157) 20.4 0.0204 Adult retinal CCTTTCTGCG (3) 7.4 0.0074 Adult retinal AGCTGCAAAA (2) 5.6 0.0056 Adult retinal ACACTTTTAT (7) 1.9 0.0019 ONL CAAAAAAAAA (157) 17.2 0.0172 ONL AGCTGCAAAA (2) 5.7 0.0057