Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288642	Prrx1	paired related homeobox 1	1	1 H2.1 (1 85.4 cM)	18933
Gene Ontology	development | DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription factor activity | transcription factor complex
Human Homolog	PRRX1[paired related homeobox 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 10 In Situ Hybridization Images

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SAGE Tags

Total 56 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCAGTCTGTG (5) 4.9 0.0049 P8 Cb GC CCAGCCTGTG (3) 1.6 0.0016 P8 Cb GC GCCAACAGCA (13) 1.6 0.0016 P8 Cb GC TGAGAAAATG (4) 1.6 0.0016 Cb medulloblastoma CCAGTCTGTG (5) 4.6 0.0046 Cb medulloblastoma ACATCACTCT (2) 2.3 0.0023 Cb medulloblastoma ATGACATCAC (7) 2.3 0.0023 Cb medulloblastoma CCAGCCTGTG (3) 2.3 0.0023 P8 GC+1d culture CCAGCCTGTG (3) 5.7 0.0057 P8 GC+1d culture CCAGTCTGTG (5) 3.4 0.0034 P8 GC+SHH+1d culture CCAGTCTGTG (5) 9.4 0.0094 P8 GC+SHH+1d culture CCAGCCTGTG (3) 4.7 0.0047 P8 GC+SHH+1d culture ATGGTACTGA (3) 1.2 0.0012 P8 GC+SHH+1d culture TGAGAAAATG (4) 1.2 0.0012 3T3 fibroblasts GCCAACAGCA (13) 21 0.021 3T3 fibroblasts CCAGCCTGTG (3) 10.5 0.0105 3T3 fibroblasts CCAGTCTGTG (5) 7 0.007 E15 cortex CCAGCCTGTG (3) 9.9 0.0099 P1 cortex ACATCACTCT (2) 4.5 0.0045 P1 cortex CCAGCCTGTG (3) 4.5 0.0045 P1 cortex CCAGTCTGTG (5) 4.5 0.0045 Hypothalamus CCAGCCTGTG (3) 5.4 0.0054 Hypothalamus ATGGTACTGA (3) 1.8 0.0018 E12.5 retina CCAGTCTGTG (5) 15 0.015 E12.5 retina CCAGCCTGTG (3) 3.8 0.0038 E12.5 retina GCCAACAGCA (13) 1.9 0.0019 E14.5 retina CCAGTCTGTG (5) 5.5 0.0055 E16.5 retina CCAGTCTGTG (5) 14.5 0.0145 E16.5 retina CCAGCCTGTG (3) 7.2 0.0072 E16.5 retina ATGACATCAC (7) 1.8 0.0018 E18.5 retina CCAGTCTGTG (5) 12.7 0.0127 E18.5 retina ATGACATCAC (7) 1.8 0.0018 P0.5 retina CCAGCCTGTG (3) 15.7 0.0157 P0.5 retina CCAGTCTGTG (5) 9.8 0.0098 P2.5 retina CCAGCCTGTG (3) 8.8 0.0088 P2.5 retina CCAGTCTGTG (5) 5.3 0.0053 P4.5 retina CCAGTCTGTG (5) 15.9 0.0159 P4.5 retina CCAGCCTGTG (3) 11.9 0.0119 P6.5 retina CCAGTCTGTG (5) 11.7 0.0117 P6.5 retina CCAGCCTGTG (3) 8.3 0.0083 P6.5 retina GCCAACAGCA (13) 1.7 0.0017 P10.5 crx- retina CCAGCCTGTG (3) 16.7 0.0167 P10.5 crx- retina ACATCACTCT (2) 1.9 0.0019 P10.5 crx- retina ATGACATCAC (7) 1.9 0.0019 P10.5 crx- retina CCAGTCTGTG (5) 1.9 0.0019 P10.5 crx+ retina CCAGTCTGTG (5) 13.5 0.0135 P10.5 crx+ retina ATGACATCAC (7) 1.9 0.0019 P10.5 crx+ retina CCAGCCTGTG (3) 1.9 0.0019 P10.5 crx+ retina GCCAACAGCA (13) 1.9 0.0019 P10.5 crx+ retina TGAGAAAATG (4) 1.9 0.0019 Adult retinal CCAGCCTGTG (3) 9.3 0.0093 Adult retinal CCAGTCTGTG (5) 7.4 0.0074 Adult retinal ACATCACTCT (2) 5.6 0.0056 Adult retinal ATGACATCAC (7) 1.9 0.0019 ONL CCAGCCTGTG (3) 3.8 0.0038 ONL CCAGTCTGTG (5) 1.9 0.0019