Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.288741	Scap	SREBP cleavage activating protein	9	9 58.0 cM	235623
Gene Ontology	cholesterol binding | cholesterol metabolism | endoplasmic reticulum membrane | endoplasmic reticulum membrane | protein binding | protein binding | regulation of fatty acid metabolism
Human Homolog	SCAP[SREBP CLEAVAGE-ACTIVATING PROTEIN]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 68 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGCTGCTCTG (7) 22.8 0.0228 P8 Cb GC GTACTGGCCA (3) 3.3 0.0033 P8 Cb GC GCGGCCCTGG 1.6 0.0016 P8 Cb GC GCTCACTTTC (3) 1.6 0.0016 P8 Cb GC GGGGAGGCCA (3) 1.6 0.0016 Cb medulloblastoma GTACTGGCCA (3) 4.6 0.0046 Cb medulloblastoma GCGGCCCTGG 2.3 0.0023 Cb medulloblastoma GGCTGCTCTG (7) 2.3 0.0023 Cb medulloblastoma TGCTGAGAGA (2) 2.3 0.0023 P8 GC+1d culture GGCTGCTCTG (7) 11.4 0.0114 P8 GC+1d culture GAGCTTAGCA 3.4 0.0034 P8 GC+1d culture CCTCTTGTGT (2) 2.3 0.0023 P8 GC+1d culture GGCTGAACAA (6) 1.1 0.0011 P8 GC+SHH+1d culture GGCTGCTCTG (7) 18.7 0.0187 P8 GC+SHH+1d culture GAGCTTAGCA 2.3 0.0023 P8 GC+SHH+1d culture GGCTGAACAA (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGGAGGCCA (3) 1.2 0.0012 P8 GC+SHH+1d culture GTACTGGCCA (3) 1.2 0.0012 3T3 fibroblasts GGCTGCTCTG (7) 35 0.035 3T3 fibroblasts GTACTGGCCA (3) 21 0.021 E15 cortex GGCTGCTCTG (7) 49.5 0.0495 E15 cortex GTACTGGCCA (3) 4.9 0.0049 Hypothalamus GGCTGCTCTG (7) 7.2 0.0072 Hypothalamus GTACTGGCCA (3) 3.6 0.0036 E12.5 retina GGCTGCTCTG (7) 30 0.03 E12.5 retina GCTCACTTTC (3) 1.9 0.0019 E12.5 retina GGTCACTTTC (3) 1.9 0.0019 E14.5 retina GGCTGCTCTG (7) 51 0.051 E14.5 retina GGTCACTTTC (3) 1.8 0.0018 E16.5 retina GGCTGCTCTG (7) 41.7 0.0417 E16.5 retina CCTCTTGTGT (2) 1.8 0.0018 E16.5 retina GGCTGAACAA (6) 1.8 0.0018 E18.5 retina GGCTGCTCTG (7) 23.6 0.0236 E18.5 retina GAGCTTAGCA 1.8 0.0018 E18.5 retina GGGGAGGCCA (3) 1.8 0.0018 E18.5 retina GGTCACTTTC (3) 1.8 0.0018 E18.5 retina TCTGCAACTT (3) 1.8 0.0018 P0.5 retina GGCTGCTCTG (7) 21.6 0.0216 P0.5 retina GTACTGGCCA (3) 7.9 0.0079 P0.5 retina TGCTGAGAGA (2) 2 0.002 P2.5 retina GGCTGCTCTG (7) 21.1 0.0211 P2.5 retina GGTCACTTTC (3) 3.5 0.0035 P4.5 retina GGCTGCTCTG (7) 23.8 0.0238 P4.5 retina GTACTGGCCA (3) 4 0.004 P4.5 retina GGTCACTTTC (3) 2 0.002 P6.5 retina GGCTGCTCTG (7) 30 0.03 P6.5 retina GTACTGGCCA (3) 8.3 0.0083 P6.5 retina TGCTGAGAGA (2) 1.7 0.0017 P10.5 crx- retina GGCTGCTCTG (7) 11.1 0.0111 P10.5 crx- retina GTACTGGCCA (3) 3.7 0.0037 P10.5 crx- retina GAGCTTAGCA 1.9 0.0019 P10.5 crx- retina GGGGAGGCCA (3) 1.9 0.0019 P10.5 crx- retina TCTGCAACTT (3) 1.9 0.0019 P10.5 crx+ retina GGCTGCTCTG (7) 25 0.025 P10.5 crx+ retina GAGCTTAGCA 1.9 0.0019 P10.5 crx+ retina GCGGCCCTGG 1.9 0.0019 P10.5 crx+ retina GGTCACTTTC (3) 1.9 0.0019 P10.5 crx+ retina GTACTGGCCA (3) 1.9 0.0019 P10.5 crx+ retina TCTGCAACTT (3) 1.9 0.0019 Adult retinal GGCTGCTCTG (7) 11.1 0.0111 Adult retinal GTACTGGCCA (3) 9.3 0.0093 Adult retinal GAGCTTAGCA 1.9 0.0019 Adult retinal TCTGCAACTT (3) 1.9 0.0019 ONL GGCTGCTCTG (7) 7.7 0.0077 ONL GTACTGGCCA (3) 3.8 0.0038 ONL ACTTCATCAG (3) 1.9 0.0019 ONL GGTCACTTTC (3) 1.9 0.0019 ONL TCTGCAACTT (3) 1.9 0.0019