Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.289707	Fscn1	fascin homolog 1, actin bundling protein (Strongylocentrotus) purpuratus)	5	5 86.0 cM	14086
Gene Ontology	actin binding
Human Homolog	FSCN1[fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 105 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CCTCGGAAAA (4) 35.9 0.0359 P8 Cb GC ATAGTAAGCT 19.6 0.0196 P8 Cb GC TCTCTAAAAA (7) 4.9 0.0049 P8 Cb GC CATCTCACTC (4) 1.6 0.0016 P8 Cb GC GCCAACCTTG (2) 1.6 0.0016 P8 Cb GC GTGTTGAGGG 1.6 0.0016 P8 Cb GC TTTGGGCTGC (9) 1.6 0.0016 Cb medulloblastoma CCTCGGAAAA (4) 18.5 0.0185 Cb medulloblastoma TCTCTAAAAA (7) 6.9 0.0069 Cb medulloblastoma TTTGGGCTGC (9) 2.3 0.0023 P8 GC+1d culture CCTCGGAAAA (4) 29.7 0.0297 P8 GC+1d culture ATAGTAAGCT 13.7 0.0137 P8 GC+1d culture GCCAACCTTG (2) 3.4 0.0034 P8 GC+1d culture GTGTTGAGGG 2.3 0.0023 P8 GC+1d culture TCTCTAAAAA (7) 2.3 0.0023 P8 GC+1d culture TTTGGGCTGC (9) 2.3 0.0023 P8 GC+1d culture CCCCTGGAAA 1.1 0.0011 P8 GC+1d culture GGGAACTCTG (2) 1.1 0.0011 P8 GC+SHH+1d culture CCTCGGAAAA (4) 26.9 0.0269 P8 GC+SHH+1d culture ATAGTAAGCT 11.7 0.0117 P8 GC+SHH+1d culture TCTCTAAAAA (7) 4.7 0.0047 P8 GC+SHH+1d culture GTGTTGAGGG 3.5 0.0035 P8 GC+SHH+1d culture GCCAACCTTG (2) 2.3 0.0023 P8 GC+SHH+1d culture GGGAGCAGTG (4) 1.2 0.0012 P8 GC+SHH+1d culture TATGCATCAT (2) 1.2 0.0012 3T3 fibroblasts CCTCGGAAAA (4) 70.1 0.0701 3T3 fibroblasts GTGTTGAGGG 14 0.014 3T3 fibroblasts GCCAACCTTG (2) 3.5 0.0035 E15 cortex CCTCGGAAAA (4) 79.2 0.0792 E15 cortex GTGTTGAGGG 14.8 0.0148 E15 cortex ATAGTAAGCT 9.9 0.0099 E15 cortex GCCAACCTTG (2) 9.9 0.0099 E15 cortex GGGAGCAGTG (4) 4.9 0.0049 E15 cortex TTTGGGCTGC (9) 4.9 0.0049 P1 cortex CCTCGGAAAA (4) 27.3 0.0273 P1 cortex ATAGTAAGCT 4.5 0.0045 P1 cortex GGGAACTCTG (2) 4.5 0.0045 P1 cortex GTGTTGAGGG 4.5 0.0045 P1 cortex TCTCTAAAAA (7) 4.5 0.0045 Hypothalamus CCTCGGAAAA (4) 12.7 0.0127 Hypothalamus ATAGTAAGCT 9.1 0.0091 Hypothalamus CCCCTGGAAA 1.8 0.0018 Hypothalamus GGGAGCAGTG (4) 1.8 0.0018 Hypothalamus TCTCTAAAAA (7) 1.8 0.0018 E12.5 retina CCTCGGAAAA (4) 48.8 0.0488 E12.5 retina ATAGTAAGCT 43.2 0.0432 E12.5 retina GTGTTGAGGG 5.6 0.0056 E12.5 retina CATCTCACTC (4) 1.9 0.0019 E12.5 retina CCCCTGGAAA 1.9 0.0019 E12.5 retina GCCAACCTTG (2) 1.9 0.0019 E12.5 retina TATGCATCAT (2) 1.9 0.0019 E14.5 retina ATAGTAAGCT 43.7 0.0437 E14.5 retina GTGTTGAGGG 9.1 0.0091 E14.5 retina TCTCTAAAAA (7) 3.6 0.0036 E14.5 retina CCTCGGAAAA (4) 1.8 0.0018 E14.5 retina TATGCATCAT (2) 1.8 0.0018 E16.5 retina ATAGTAAGCT 56.1 0.0561 E16.5 retina GTGTTGAGGG 16.3 0.0163 E16.5 retina CCTCGGAAAA (4) 3.6 0.0036 E16.5 retina ATTACGCCAA (233) 1.8 0.0018 E16.5 retina GCCAACCTTG (2) 1.8 0.0018 E18.5 retina ATAGTAAGCT 32.7 0.0327 E18.5 retina CCTCGGAAAA (4) 16.4 0.0164 E18.5 retina GTGTTGAGGG 3.6 0.0036 E18.5 retina TATGCATCAT (2) 1.8 0.0018 E18.5 retina TCTCTAAAAA (7) 1.8 0.0018 P0.5 retina CCTCGGAAAA (4) 47.1 0.0471 P0.5 retina ATAGTAAGCT 13.7 0.0137 P0.5 retina GCCAACCTTG (2) 7.9 0.0079 P0.5 retina ATTACGCCAA (233) 2 0.002 P0.5 retina GGGAACTCTG (2) 2 0.002 P0.5 retina GTGTTGAGGG 2 0.002 P2.5 retina ATAGTAAGCT 29.9 0.0299 P2.5 retina CCTCGGAAAA (4) 22.9 0.0229 P2.5 retina GTGTTGAGGG 8.8 0.0088 P2.5 retina CATCTCACTC (4) 1.8 0.0018 P2.5 retina GCCAACCTTG (2) 1.8 0.0018 P2.5 retina GGGAACTCTG (2) 1.8 0.0018 P2.5 retina TCTCTAAAAA (7) 1.8 0.0018 P4.5 retina ATAGTAAGCT 35.7 0.0357 P4.5 retina CCTCGGAAAA (4) 15.9 0.0159 P4.5 retina TCTCTAAAAA (7) 4 0.004 P4.5 retina TTTGGGCTGC (9) 2 0.002 P6.5 retina ATAGTAAGCT 25 0.025 P6.5 retina CCTCGGAAAA (4) 16.7 0.0167 P6.5 retina GTGTTGAGGG 13.3 0.0133 P6.5 retina TCTCTAAAAA (7) 3.3 0.0033 P6.5 retina TTTGGGCTGC (9) 3.3 0.0033 P6.5 retina CATCTCACTC (4) 1.7 0.0017 P6.5 retina GGGAACTCTG (2) 1.7 0.0017 P10.5 crx- retina ATAGTAAGCT 16.7 0.0167 P10.5 crx- retina CCTCGGAAAA (4) 9.3 0.0093 P10.5 crx- retina GTGTTGAGGG 5.6 0.0056 P10.5 crx- retina TCTCTAAAAA (7) 1.9 0.0019 P10.5 crx+ retina ATAGTAAGCT 15.4 0.0154 P10.5 crx+ retina CCTCGGAAAA (4) 5.8 0.0058 P10.5 crx+ retina GTGTTGAGGG 5.8 0.0058 P10.5 crx+ retina CATCTCACTC (4) 1.9 0.0019 P10.5 crx+ retina TCTCTAAAAA (7) 1.9 0.0019 Adult retinal CCTCGGAAAA (4) 14.8 0.0148 Adult retinal ATTACGCCAA (233) 3.7 0.0037 Adult retinal GCCAACCTTG (2) 3.7 0.0037 Adult retinal ATAGTAAGCT 1.9 0.0019 ONL CCTCGGAAAA (4) 23 0.023 ONL GTGTTGAGGG 1.9 0.0019