Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.290251	Cnbp1	cellular nucleic acid binding protein 1	6	6 D1	12785
Gene Ontology	cholesterol biosynthesis | cytosol | DNA binding | endoplasmic reticulum | nucleic acid binding | nucleus | positive regulation of cell proliferation | positive regulation of transcription from Pol II promoter | regulation of transcription, DNA-dependent | transcription factor activity
Human Homolog	ZNF9[zinc finger protein 9 (a cellular retroviral nucleic acid binding protein)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 95 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TACCATCAAT 11.4 0.0114 P8 Cb GC TAGGAGGTAA (2) 9.8 0.0098 P8 Cb GC CCACAGAGGC (3) 1.6 0.0016 P8 Cb GC GCCCGCCAGG (2) 1.6 0.0016 P8 Cb GC GGGGGGAGGG (17) 1.6 0.0016 P8 Cb GC TTAATACATA 1.6 0.0016 Cb medulloblastoma TAGGAGGTAA (2) 6.9 0.0069 Cb medulloblastoma GCCCGCCAGG (2) 4.6 0.0046 Cb medulloblastoma TAGCCATCAA (4) 2.3 0.0023 Cb medulloblastoma TAGGCATCCA (6) 2.3 0.0023 P8 GC+1d culture TAGGAGGTAA (2) 11.4 0.0114 P8 GC+1d culture TTAATACATA 2.3 0.0023 P8 GC+1d culture CCACAGAGGC (3) 1.1 0.0011 P8 GC+1d culture GGAACACACT (2) 1.1 0.0011 P8 GC+1d culture TACCATCAAT 1.1 0.0011 P8 GC+1d culture TAGCCATCCA (2) 1.1 0.0011 P8 GC+SHH+1d culture TAGGAGGTAA (2) 14.1 0.0141 P8 GC+SHH+1d culture TACCATCAAT 7 0.007 P8 GC+SHH+1d culture CCACAGAGGC (3) 2.3 0.0023 P8 GC+SHH+1d culture GGAACACACT (2) 1.2 0.0012 3T3 fibroblasts TAGGAGGTAA (2) 10.5 0.0105 3T3 fibroblasts GCCCGCCAGG (2) 3.5 0.0035 3T3 fibroblasts TGGGTGCTTG (3) 3.5 0.0035 E15 cortex GCCCGCCAGG (2) 24.7 0.0247 E15 cortex TAGGAGGTAA (2) 19.8 0.0198 P1 cortex TAGGAGGTAA (2) 4.5 0.0045 P1 cortex TGGGTGCTTG (3) 4.5 0.0045 Hypothalamus TAGGAGGTAA (2) 14.5 0.0145 Hypothalamus GCCCGCCAGG (2) 7.2 0.0072 Hypothalamus TAGCCATCAA (4) 1.8 0.0018 Hypothalamus TGGGTGCTTG (3) 1.8 0.0018 E12.5 retina TAGGAGGTAA (2) 13.1 0.0131 E12.5 retina GCCCGCCAGG (2) 1.9 0.0019 E12.5 retina GGAACACACT (2) 1.9 0.0019 E12.5 retina GTCACTGGGA (4) 1.9 0.0019 E12.5 retina TAGCCATCCA (2) 1.9 0.0019 E12.5 retina TTTTACGTTT 1.9 0.0019 E14.5 retina TAGGAGGTAA (2) 7.3 0.0073 E14.5 retina GGAACACACT (2) 3.6 0.0036 E14.5 retina GTCACTGGGA (4) 3.6 0.0036 E14.5 retina GCCCGCCAGG (2) 1.8 0.0018 E14.5 retina TAGGCATCCA (6) 1.8 0.0018 E16.5 retina GTCACTGGGA (4) 5.4 0.0054 E16.5 retina TAGCCATCCA (2) 5.4 0.0054 E16.5 retina TAGGAGGTAA (2) 3.6 0.0036 E16.5 retina CCACAGAGGC (3) 1.8 0.0018 E16.5 retina TGGGTGCTTG (3) 1.8 0.0018 E18.5 retina GCCCGCCAGG (2) 7.3 0.0073 E18.5 retina TAGGAGGTAA (2) 7.3 0.0073 E18.5 retina GTCACTGGGA (4) 5.5 0.0055 E18.5 retina GGGGGGAGGG (17) 1.8 0.0018 E18.5 retina TACCATCAAT 1.8 0.0018 E18.5 retina TAGCCATCCA (2) 1.8 0.0018 P0.5 retina TAGGAGGTAA (2) 25.5 0.0255 P0.5 retina GGAACACACT (2) 3.9 0.0039 P0.5 retina TTCACAGAGA (4) 3.9 0.0039 P0.5 retina TAGCCATCAA (4) 2 0.002 P2.5 retina TTAATACATA 5.3 0.0053 P2.5 retina GCCCGCCAGG (2) 3.5 0.0035 P2.5 retina TAGGAGGTAA (2) 3.5 0.0035 P2.5 retina CCACAGAGGC (3) 1.8 0.0018 P2.5 retina GGGGGGAGGG (17) 1.8 0.0018 P4.5 retina TAGGAGGTAA (2) 7.9 0.0079 P4.5 retina GCCCGCCAGG (2) 4 0.004 P4.5 retina GTCACTGGGA (4) 4 0.004 P4.5 retina GGGGGGAGGG (17) 2 0.002 P4.5 retina TGGGTGCTTG (3) 2 0.002 P4.5 retina TTAATACATA 2 0.002 P4.5 retina TTCACAGAGA (4) 2 0.002 P4.5 retina TTTTACGTTT 2 0.002 P6.5 retina TAGGAGGTAA (2) 11.7 0.0117 P6.5 retina TTCACAGAGA (4) 5 0.005 P6.5 retina AGCAGCAATG (2) 3.3 0.0033 P6.5 retina GTCACTGGGA (4) 3.3 0.0033 P6.5 retina GCCCGCCAGG (2) 1.7 0.0017 P6.5 retina TAGCCATCAA (4) 1.7 0.0017 P10.5 crx- retina TAGGAGGTAA (2) 20.4 0.0204 P10.5 crx- retina TAACTACAAC (2) 3.7 0.0037 P10.5 crx- retina GGAACACACT (2) 1.9 0.0019 P10.5 crx- retina TTTTACGTTT 1.9 0.0019 P10.5 crx+ retina TAACTACAAC (2) 3.8 0.0038 P10.5 crx+ retina GCCCGCCAGG (2) 1.9 0.0019 P10.5 crx+ retina GGGGGGAGGG (17) 1.9 0.0019 P10.5 crx+ retina GTCACTGGGA (4) 1.9 0.0019 Adult retinal TAGGAGGTAA (2) 16.7 0.0167 Adult retinal TTAATACATA 3.7 0.0037 Adult retinal AGCAGCAATG (2) 1.9 0.0019 Adult retinal GGAACACACT (2) 1.9 0.0019 Adult retinal TTCACAGAGA (4) 1.9 0.0019 ONL TAGGCATCCA (6) 3.8 0.0038 ONL GGAACACACT (2) 1.9 0.0019 ONL GGGGGGAGGG (17) 1.9 0.0019 ONL TAGCCATCCA (2) 1.9 0.0019 ONL TAGGAGGTAA (2) 1.9 0.0019 ONL TGGGTGCTTG (3) 1.9 0.0019