Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29027	Sparcl1	SPARC-like 1 (mast9, hevin)	5	5 E4 (5 55.0 cM)	13602
Gene Ontology	calcium ion binding | extracellular matrix | extracellular space
Human Homolog	SPARCL1[SPARC-like 1 (mast9, hevin)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 117 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGAGGAAGT (2) 48.9 0.0489 P8 Cb GC AAGGATGTGC (4) 16.3 0.0163 P8 Cb GC CATTAAGCTG (2) 8.2 0.0082 P8 Cb GC GGAAAAAAAA (69) 8.2 0.0082 P8 Cb GC TTGTCACCTC (2) 6.5 0.0065 P8 Cb GC GCGGCTATCT 4.9 0.0049 P8 Cb GC CTGAAGAAGT (8) 1.6 0.0016 P8 Cb GC GAACACTGCA (3) 1.6 0.0016 P8 Cb GC TGAGAGAAGA (2) 1.6 0.0016 Cb medulloblastoma CTGAGGAAGT (2) 150.3 0.1503 Cb medulloblastoma GGAAAAAAAA (69) 41.6 0.0416 Cb medulloblastoma AAGGATGTGC (4) 37 0.037 Cb medulloblastoma GCGGCTATCT 6.9 0.0069 Cb medulloblastoma TTGTCACCTC (2) 6.9 0.0069 Cb medulloblastoma CTGAAGAAGT (8) 2.3 0.0023 Cb medulloblastoma GAACACTGCA (3) 2.3 0.0023 Cb medulloblastoma GTGGCTAACT (3) 2.3 0.0023 P8 GC+1d culture AAGGATGTGC (4) 17.1 0.0171 P8 GC+1d culture CTGAGGAAGT (2) 9.1 0.0091 P8 GC+1d culture GGAAAAAAAA (69) 5.7 0.0057 P8 GC+1d culture CATTAAGCTG (2) 3.4 0.0034 P8 GC+1d culture TTGTCACCTC (2) 3.4 0.0034 P8 GC+1d culture GCGGCTATCT 2.3 0.0023 P8 GC+SHH+1d culture AAGGATGTGC (4) 15.2 0.0152 P8 GC+SHH+1d culture CTGAGGAAGT (2) 9.4 0.0094 P8 GC+SHH+1d culture TTGTCACCTC (2) 9.4 0.0094 P8 GC+SHH+1d culture GGAAAAAAAA (69) 7 0.007 P8 GC+SHH+1d culture AAAGCTGTGC (4) 1.2 0.0012 P8 GC+SHH+1d culture CATTAAGCTG (2) 1.2 0.0012 P8 GC+SHH+1d culture CTGTGGAACT (5) 1.2 0.0012 P8 GC+SHH+1d culture TGCTAAGTCC (2) 1.2 0.0012 3T3 fibroblasts AAGGATGTGC (4) 24.5 0.0245 E15 cortex AAGGATGTGC (4) 9.9 0.0099 E15 cortex CTGAGGAAGT (2) 9.9 0.0099 E15 cortex GGAAAAAAAA (69) 9.9 0.0099 P1 cortex CTGAGGAAGT (2) 27.3 0.0273 P1 cortex CTGAAGAAGT (8) 9.1 0.0091 P1 cortex AAGGATGTGC (4) 4.5 0.0045 P1 cortex GGAAAAAAAA (69) 4.5 0.0045 P1 cortex TTGTCACCTC (2) 4.5 0.0045 Hypothalamus CTGAGGAAGT (2) 115.9 0.1159 Hypothalamus AAGGATGTGC (4) 14.5 0.0145 Hypothalamus GGAAAAAAAA (69) 14.5 0.0145 Hypothalamus TGAGAGAAGA (2) 7.2 0.0072 Hypothalamus TTGTCACCTC (2) 7.2 0.0072 Hypothalamus TTGTGAACAC 3.6 0.0036 Hypothalamus CATTAAGCTG (2) 1.8 0.0018 Hypothalamus CTGAAGAAGT (8) 1.8 0.0018 Hypothalamus GGTGCAGGGG (6) 1.8 0.0018 Hypothalamus GTGGCTAACT (3) 1.8 0.0018 Hypothalamus TGCTAAGTCC (2) 1.8 0.0018 E12.5 retina TTGTCACCTC (2) 13.1 0.0131 E12.5 retina AAGGATGTGC (4) 9.4 0.0094 E12.5 retina CATTAAGCTG (2) 5.6 0.0056 E12.5 retina AAAGCTGTGC (4) 1.9 0.0019 E12.5 retina CTGTGGAACT (5) 1.9 0.0019 E12.5 retina GGAAAAAAAA (69) 1.9 0.0019 E14.5 retina AAGGATGTGC (4) 12.8 0.0128 E14.5 retina GGAAAAAAAA (69) 10.9 0.0109 E14.5 retina TTGTCACCTC (2) 7.3 0.0073 E14.5 retina GGTGCAGGGG (6) 1.8 0.0018 E14.5 retina TTGTGAACAC 1.8 0.0018 E16.5 retina AAGGATGTGC (4) 14.5 0.0145 E16.5 retina TTGTCACCTC (2) 5.4 0.0054 E16.5 retina CTGAGGAAGT (2) 1.8 0.0018 E16.5 retina GGAAAAAAAA (69) 1.8 0.0018 E18.5 retina GGAAAAAAAA (69) 16.4 0.0164 E18.5 retina TTGTCACCTC (2) 14.6 0.0146 E18.5 retina AAGGATGTGC (4) 7.3 0.0073 E18.5 retina GAACACTGCA (3) 5.5 0.0055 P0.5 retina GGAAAAAAAA (69) 13.7 0.0137 P0.5 retina TTGTCACCTC (2) 13.7 0.0137 P0.5 retina AAGGATGTGC (4) 9.8 0.0098 P0.5 retina GAAATGCAAT 2 0.002 P2.5 retina GGAAAAAAAA (69) 7 0.007 P2.5 retina TTGTCACCTC (2) 7 0.007 P2.5 retina CTGAGGAAGT (2) 5.3 0.0053 P2.5 retina AAGGATGTGC (4) 3.5 0.0035 P2.5 retina CATTAAGCTG (2) 1.8 0.0018 P4.5 retina GGAAAAAAAA (69) 13.9 0.0139 P4.5 retina TTGTCACCTC (2) 7.9 0.0079 P4.5 retina AAGGATGTGC (4) 4 0.004 P6.5 retina GGAAAAAAAA (69) 13.3 0.0133 P6.5 retina AAGGATGTGC (4) 11.7 0.0117 P6.5 retina CTGAGGAAGT (2) 6.7 0.0067 P6.5 retina TTGTCACCTC (2) 3.3 0.0033 P6.5 retina AAAGCTGTGC (4) 1.7 0.0017 P6.5 retina CTGAAGAAGT (8) 1.7 0.0017 P6.5 retina CTGTGGAACT (5) 1.7 0.0017 P6.5 retina GAAATGCAAT 1.7 0.0017 P6.5 retina GGTGCAGGGG (6) 1.7 0.0017 P10.5 crx- retina AAGGATGTGC (4) 61.3 0.0613 P10.5 crx- retina CTGAGGAAGT (2) 29.7 0.0297 P10.5 crx- retina GGAAAAAAAA (69) 3.7 0.0037 P10.5 crx- retina CTGTGGAACT (5) 1.9 0.0019 P10.5 crx- retina GTGGCTAACT (3) 1.9 0.0019 P10.5 crx- retina TGAGAGAAGA (2) 1.9 0.0019 P10.5 crx+ retina CTGAGGAAGT (2) 28.8 0.0288 P10.5 crx+ retina GGAAAAAAAA (69) 15.4 0.0154 P10.5 crx+ retina AAGGATGTGC (4) 13.5 0.0135 P10.5 crx+ retina TTGTCACCTC (2) 9.6 0.0096 Adult retinal CTGAGGAAGT (2) 24.1 0.0241 Adult retinal AAGGATGTGC (4) 20.4 0.0204 Adult retinal GGAAAAAAAA (69) 5.6 0.0056 Adult retinal GAAATGCAAT 1.9 0.0019 Adult retinal GAACACTGCA (3) 1.9 0.0019 Adult retinal TGCTAAGTCC (2) 1.9 0.0019 Adult retinal TTGTCACCTC (2) 1.9 0.0019 Adult retinal TTGTGAACAC 1.9 0.0019 ONL GGAAAAAAAA (69) 17.2 0.0172 ONL AAGGATGTGC (4) 7.7 0.0077 ONL CTGAGGAAGT (2) 5.7 0.0057 ONL AAAGCTGTGC (4) 1.9 0.0019 ONL CATTAAGCTG (2) 1.9 0.0019 ONL GTGGCTAACT (3) 1.9 0.0019 ONL TTGTCACCTC (2) 1.9 0.0019 ONL TTGTGAACAC 1.9 0.0019