Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29210	Vat1	vesicle amine transport protein 1 homolog (T californica)	11		26949
Gene Ontology	alcohol dehydrogenase activity, zinc-dependent | NADPH:quinone reductase activity | oxidoreductase activity | zinc ion binding
Human Homolog	VAT1[vesicle amine transport protein 1 homolog (T californica)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 71 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TGGGAAGTGT (8) 3.3 0.0033 P8 Cb GC GAGGCCTCAA (5) 1.6 0.0016 P8 Cb GC GAGGCTCAAT 1.6 0.0016 P8 Cb GC TCACGATGCT (3) 1.6 0.0016 Cb medulloblastoma TGGGAGTGTG (3) 6.9 0.0069 Cb medulloblastoma GAGGCCTCAA (5) 4.6 0.0046 Cb medulloblastoma GCCGCACTGG (3) 2.3 0.0023 Cb medulloblastoma GGGGAAATGG (9) 2.3 0.0023 Cb medulloblastoma TGGGAAGTGT (8) 2.3 0.0023 P8 GC+1d culture TGGGAAGTGT (8) 20.5 0.0205 P8 GC+1d culture ATGTCATCAA (4) 13.7 0.0137 P8 GC+1d culture GAGGCCTCAA (5) 2.3 0.0023 P8 GC+SHH+1d culture ATGTCATCAA (4) 12.9 0.0129 P8 GC+SHH+1d culture TGGGAAGTGT (8) 8.2 0.0082 P8 GC+SHH+1d culture GAGGCTCAAT 1.2 0.0012 P8 GC+SHH+1d culture GCCCGCACCT (2) 1.2 0.0012 P8 GC+SHH+1d culture GCCGCACTGG (3) 1.2 0.0012 3T3 fibroblasts TGGGAAGTGT (8) 10.5 0.0105 E15 cortex ATGTCATCAA (4) 9.9 0.0099 E15 cortex GCCCGCACCT (2) 4.9 0.0049 E15 cortex TGGGAAGTGT (8) 4.9 0.0049 P1 cortex TGGGAAGTGT (8) 18.2 0.0182 P1 cortex ATGTCATCAA (4) 9.1 0.0091 P1 cortex GAGGCCTCAA (5) 4.5 0.0045 P1 cortex GGGGAAATGG (9) 4.5 0.0045 Hypothalamus ATGTCATCAA (4) 3.6 0.0036 Hypothalamus GAGGCCTCAA (5) 3.6 0.0036 Hypothalamus GCCCGCACCT (2) 3.6 0.0036 Hypothalamus TCACGATGCT (3) 3.6 0.0036 Hypothalamus TGGGAAGTGT (8) 3.6 0.0036 Hypothalamus GCCGCACTGG (3) 1.8 0.0018 E12.5 retina ATGTCATCAA (4) 11.3 0.0113 E12.5 retina TGGGAAGTGT (8) 9.4 0.0094 E12.5 retina GAGGCCTCAA (5) 3.8 0.0038 E14.5 retina TGGGAAGTGT (8) 12.8 0.0128 E14.5 retina ATGTCATCAA (4) 7.3 0.0073 E14.5 retina TGGAAGTGTA 1.8 0.0018 E16.5 retina ATGTCATCAA (4) 10.9 0.0109 E16.5 retina TGGGAAGTGT (8) 5.4 0.0054 E16.5 retina GAGGCCTCAA (5) 1.8 0.0018 E16.5 retina GCCGCACTGG (3) 1.8 0.0018 E16.5 retina TGGAAGTGTA 1.8 0.0018 E18.5 retina ATGTCATCAA (4) 7.3 0.0073 E18.5 retina TGGGAAGTGT (8) 7.3 0.0073 E18.5 retina GCCAGCCCTG (2) 1.8 0.0018 E18.5 retina GCCCGCACCT (2) 1.8 0.0018 P0.5 retina ATGTCATCAA (4) 7.9 0.0079 P0.5 retina TGGGAAGTGT (8) 3.9 0.0039 P0.5 retina TGGAAGTGTA 2 0.002 P2.5 retina TGGGAAGTGT (8) 5.3 0.0053 P2.5 retina GAGGCCTCAA (5) 1.8 0.0018 P2.5 retina GCCAGCCCTG (2) 1.8 0.0018 P2.5 retina GGGGAAATGG (9) 1.8 0.0018 P4.5 retina TGGAAGTGTA 4 0.004 P4.5 retina ATGTCATCAA (4) 2 0.002 P6.5 retina ATGTCATCAA (4) 5 0.005 P6.5 retina GAGGCCTCAA (5) 3.3 0.0033 P6.5 retina GAGGCTCAAT 1.7 0.0017 P10.5 crx- retina ATGTCATCAA (4) 5.6 0.0056 P10.5 crx- retina GAGGCCTCAA (5) 3.7 0.0037 P10.5 crx- retina TGGGAAGTGT (8) 3.7 0.0037 P10.5 crx- retina GCCAGCCCTG (2) 1.9 0.0019 P10.5 crx- retina GGGGAAATGG (9) 1.9 0.0019 P10.5 crx+ retina TGGGAAGTGT (8) 3.8 0.0038 P10.5 crx+ retina GAGGCCTCAA (5) 1.9 0.0019 P10.5 crx+ retina TCACGATGCT (3) 1.9 0.0019 Adult retinal ATGTCATCAA (4) 14.8 0.0148 Adult retinal TGGGAAGTGT (8) 5.6 0.0056 Adult retinal GAGGCCTCAA (5) 3.7 0.0037 Adult retinal TGGAAGTGTA 1.9 0.0019 ONL ATGTCATCAA (4) 9.6 0.0096