Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29564	Mmp2	matrix metalloproteinase 2	8	8 44.0 cM	17390
Gene Ontology	calcium ion binding | collagen catabolism | extracellular matrix | extracellular space | gelatinase A activity | hydrolase activity | metalloendopeptidase activity | metallopeptidase activity | proteolysis and peptidolysis | zinc ion binding
Human Homolog	MMP2[matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 52 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGATGGGGAG (5) 62 0.062 P8 Cb GC CCTGGCCTTT (5) 1.6 0.0016 P8 Cb GC GGAAATGGCA 1.6 0.0016 P8 Cb GC GGGAATGGCA (3) 1.6 0.0016 Cb medulloblastoma GGATGGGGAG (5) 41.6 0.0416 Cb medulloblastoma CTGCACCATC (2) 2.3 0.0023 Cb medulloblastoma GGAAATGGCA 2.3 0.0023 P8 GC+1d culture GGATGGGGAG (5) 50.2 0.0502 P8 GC+1d culture CCTTTGCCCC (3) 4.6 0.0046 P8 GC+1d culture GGAAATGGCA 4.6 0.0046 P8 GC+1d culture CTGCACCATC (2) 1.1 0.0011 P8 GC+SHH+1d culture GGATGGGGAG (5) 39.8 0.0398 P8 GC+SHH+1d culture GGAAATGGCA 4.7 0.0047 P8 GC+SHH+1d culture CCTTTGCCCC (3) 1.2 0.0012 P8 GC+SHH+1d culture CTGCACCATC (2) 1.2 0.0012 3T3 fibroblasts GGATGGGGAG (5) 31.5 0.0315 3T3 fibroblasts GGAAATGGCA 14 0.014 3T3 fibroblasts CTGCACCATC (2) 3.5 0.0035 E15 cortex GGATGGGGAG (5) 14.8 0.0148 E15 cortex CCTGGCCTTT (5) 4.9 0.0049 E15 cortex CCTTTGCCCC (3) 4.9 0.0049 E15 cortex GGGAATGGCA (3) 4.9 0.0049 P1 cortex GGATGGGGAG (5) 18.2 0.0182 P1 cortex CCTTTGCCCC (3) 4.5 0.0045 Hypothalamus GGATGGGGAG (5) 38 0.038 E12.5 retina GGATGGGGAG (5) 105.1 0.1051 E12.5 retina CTGCACCATC (2) 1.9 0.0019 E14.5 retina GGATGGGGAG (5) 25.5 0.0255 E14.5 retina CCTGGCCTTT (5) 1.8 0.0018 E14.5 retina CCTTTGCCCC (3) 1.8 0.0018 E16.5 retina GGATGGGGAG (5) 34.4 0.0344 E16.5 retina GGAAATGGCA 5.4 0.0054 E18.5 retina GGATGGGGAG (5) 54.6 0.0546 P0.5 retina GGATGGGGAG (5) 60.8 0.0608 P0.5 retina GGAAATGGCA 3.9 0.0039 P2.5 retina GGATGGGGAG (5) 89.7 0.0897 P4.5 retina GGATGGGGAG (5) 57.5 0.0575 P6.5 retina GGATGGGGAG (5) 76.7 0.0767 P6.5 retina GGAAATGGCA 3.3 0.0033 P6.5 retina CCTTTGCCCC (3) 1.7 0.0017 P10.5 crx- retina GGATGGGGAG (5) 16.7 0.0167 P10.5 crx- retina GGAAATGGCA 1.9 0.0019 P10.5 crx+ retina GGATGGGGAG (5) 75 0.075 P10.5 crx+ retina CTGCACCATC (2) 1.9 0.0019 P10.5 crx+ retina GGAAATGGCA 1.9 0.0019 Adult retinal GGATGGGGAG (5) 18.5 0.0185 Adult retinal CCTTTGCCCC (3) 5.6 0.0056 Adult retinal CCTGGCCTTT (5) 1.9 0.0019 Adult retinal GGAAATGGCA 1.9 0.0019 ONL GGATGGGGAG (5) 38.3 0.0383 ONL CCTGGCCTTT (5) 1.9 0.0019 ONL GGGAATGGCA (3) 1.9 0.0019