Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.2965	Rho	rhodopsin	6	6 E3 (6 51.5 cM)	212541
Gene Ontology	G-protein coupled photoreceptor activity | G-protein coupled receptor activity | G-protein coupled receptor protein signaling pathway | integral to membrane | perception of light | photoreceptor outer segment | phototransduction | receptor activity | rhodopsin-like receptor activity | vision
Human Homolog	RHO[rhodopsin (opsin 2, rod pigment) (retinitis pigmentosa 4, autosomal dominant)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 12 In Situ Hybridization Images

Images -- Click to Enlarge

SAGE Tags

Total 253 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TTTCCTTCAA (5) 29.4 0.0294 P8 Cb GC AAAAGCAAAA (2) 9.8 0.0098 P8 Cb GC AAAGCAAAAA (9) 3.3 0.0033 P8 Cb GC ACAAGTGCTC (2) 3.3 0.0033 P8 Cb GC GGTCATCTTC (2) 3.3 0.0033 P8 Cb GC AAAGCCAAAA (6) 1.6 0.0016 P8 Cb GC CCCAGTTCAC (3) 1.6 0.0016 P8 Cb GC GCCATCTTCC (8) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma GGTCATCTTC (2) 11.6 0.0116 Cb medulloblastoma TTTCCTTCAA (5) 11.6 0.0116 Cb medulloblastoma AAAAGCAAAA (2) 9.2 0.0092 Cb medulloblastoma AAAGCAAAAT (7) 9.2 0.0092 Cb medulloblastoma ACAAGTGCTC (2) 6.9 0.0069 Cb medulloblastoma AAAGCAAAAA (9) 4.6 0.0046 Cb medulloblastoma GACAAAGTGT (2) 2.3 0.0023 Cb medulloblastoma GCCATCTTCT (6) 2.3 0.0023 Cb medulloblastoma GGGACAGAGG (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TTTCCTTCAA (5) 29.7 0.0297 P8 GC+1d culture GCCATCTTCC (8) 8 0.008 P8 GC+1d culture AAAGCAAAAA (9) 5.7 0.0057 P8 GC+1d culture GGTCATCTTC (2) 3.4 0.0034 P8 GC+1d culture AAAAGCAAAA (2) 1.1 0.0011 P8 GC+1d culture AAAGCAAAAT (7) 1.1 0.0011 P8 GC+1d culture AAAGCCAAAA (6) 1.1 0.0011 P8 GC+1d culture GAAACTGGGA (6) 1.1 0.0011 P8 GC+1d culture GATGTCCTCA (3) 1.1 0.0011 P8 GC+1d culture GCTGCCACAC (4) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TTTCCTTCAA (5) 23.4 0.0234 P8 GC+SHH+1d culture GGTCATCTTC (2) 12.9 0.0129 P8 GC+SHH+1d culture AAAGCAAAAT (7) 5.9 0.0059 P8 GC+SHH+1d culture GACAAAGTGT (2) 5.9 0.0059 P8 GC+SHH+1d culture GCCATCTTCC (8) 5.9 0.0059 P8 GC+SHH+1d culture AAAAGCAAAA (2) 2.3 0.0023 P8 GC+SHH+1d culture ACAAGTGCTC (2) 2.3 0.0023 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TTTCCTTCAA (5) 10.5 0.0105 3T3 fibroblasts GCCATCTTCC (8) 7 0.007 3T3 fibroblasts GACAAAGTGT (2) 3.5 0.0035 3T3 fibroblasts GCCATCTTCT (6) 3.5 0.0035 3T3 fibroblasts TCCTCCACCA (8) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex AAAGCAAAAT (7) 4.9 0.0049 E15 cortex GCCATCTTCC (8) 4.9 0.0049 E15 cortex GGGCCCTCCT (4) 4.9 0.0049 E15 cortex TTTCCTTCAA (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex GGTCATCTTC (2) 13.6 0.0136 P1 cortex GATGTCCTCA (3) 9.1 0.0091 P1 cortex GGGCCCTCCT (4) 9.1 0.0091 P1 cortex TTTCCTTCAA (5) 9.1 0.0091 P1 cortex GCCATCTTCC (8) 4.5 0.0045 P1 cortex GGGGACAGAG (5) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus GGGAACGAAG (8) 16.3 0.0163 Hypothalamus TTTCCTTCAA (5) 16.3 0.0163 Hypothalamus ACAAGTGCTC (2) 7.2 0.0072 Hypothalamus GGTCATCTTC (2) 7.2 0.0072 Hypothalamus AAAGCAAAAT (7) 5.4 0.0054 Hypothalamus GCCATCTTCC (8) 5.4 0.0054 Hypothalamus GCCATCTTCT (6) 3.6 0.0036 Hypothalamus GCTGCCACAC (4) 1.8 0.0018 Hypothalamus GGGACAGAGG (5) 1.8 0.0018 Hypothalamus GGGCCCTCCT (4) 1.8 0.0018 Hypothalamus TCTGGCTGGA (5) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TTTCCTTCAA (5) 15 0.015 E12.5 retina GGTCATCTTC (2) 7.5 0.0075 E12.5 retina GCCATCTTCC (8) 3.8 0.0038 E12.5 retina AAAAGCAAAA (2) 1.9 0.0019 E12.5 retina AAAGCAAAAA (9) 1.9 0.0019 E12.5 retina AGGAAGGGGG (9) 1.9 0.0019 E12.5 retina GACAAAGTGT (2) 1.9 0.0019 E12.5 retina GCTGCCACAC (4) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TTTCCTTCAA (5) 14.6 0.0146 E14.5 retina GGTCATCTTC (2) 10.9 0.0109 E14.5 retina AAAGCAAAAA (9) 1.8 0.0018 E14.5 retina AAAGCAAAAT (7) 1.8 0.0018 E14.5 retina CAGCATCCCC (3) 1.8 0.0018 E14.5 retina CAGGCTCCCT (4) 1.8 0.0018 E14.5 retina GAAACTGGGA (6) 1.8 0.0018 E14.5 retina GCCATCTTCC (8) 1.8 0.0018 E14.5 retina GGGAACGAAG (8) 1.8 0.0018 E14.5 retina GGGACAGAGG (5) 1.8 0.0018 E14.5 retina GGGCCCTCCT (4) 1.8 0.0018 E14.5 retina TCTGGCTGGA (5) 1.8 0.0018 E14.5 retina TCTGGCTGGG (5) 1.8 0.0018 E14.5 retina TTCGTGGCCT (2) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TTTCCTTCAA (5) 18.1 0.0181 E16.5 retina GGTCATCTTC (2) 7.2 0.0072 E16.5 retina AAAGCAAAAT (7) 5.4 0.0054 E16.5 retina GCCATCTTCC (8) 5.4 0.0054 E16.5 retina TTCGTGGCCT (2) 5.4 0.0054 E16.5 retina AAAGCAAAAA (9) 3.6 0.0036 E16.5 retina TCCTCCACCA (8) 3.6 0.0036 E16.5 retina ACAAGTGTCC (3) 1.8 0.0018 E16.5 retina CAATGGTCAA (2) 1.8 0.0018 E16.5 retina CCATTTACTC (3) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina GGTCATCTTC (2) 14.6 0.0146 E18.5 retina AAAGCAAAAT (7) 5.5 0.0055 E18.5 retina AAAGCAAAAA (9) 3.6 0.0036 E18.5 retina GCCATCTTCC (8) 3.6 0.0036 E18.5 retina TTTCCTTCAA (5) 3.6 0.0036 E18.5 retina AGGAAGGGGG (9) 1.8 0.0018 E18.5 retina CAGGCTCCCT (4) 1.8 0.0018 E18.5 retina CCCAGTTCAC (3) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina GACAAAGTGT (2) 7.9 0.0079 P0.5 retina GCCATCTTCC (8) 3.9 0.0039 P0.5 retina TTTCCTTCAA (5) 3.9 0.0039 P0.5 retina AAAAGCAAAA (2) 2 0.002 P0.5 retina AAACCCCACT 2 0.002 P0.5 retina AAAGCAAAAT (7) 2 0.002 P0.5 retina ACAAGTGCTC (2) 2 0.002 P0.5 retina AGCTGGGACC 2 0.002 P0.5 retina GGGACAGAGG (5) 2 0.002 P0.5 retina GGTCATCTTC (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina GGTCATCTTC (2) 12.3 0.0123 P2.5 retina TTTCCTTCAA (5) 8.8 0.0088 P2.5 retina AAAGCAAAAT (7) 5.3 0.0053 P2.5 retina CAGCATCCCC (3) 5.3 0.0053 P2.5 retina AGGAAGGGGG (9) 3.5 0.0035 P2.5 retina ACAAGTGCTC (2) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AAAGCAAAAA (9) 15.9 0.0159 P4.5 retina GGTCATCTTC (2) 11.9 0.0119 P4.5 retina AAAGCAAAAT (7) 9.9 0.0099 P4.5 retina TTTCCTTCAA (5) 9.9 0.0099 P4.5 retina ACAAGTGCTC (2) 4 0.004 P4.5 retina GCCATCTTCC (8) 4 0.004 P4.5 retina AAACCCCACT 2 0.002 P4.5 retina ACAAGTGTCC (3) 2 0.002 P4.5 retina AGCTGGGACC 2 0.002 P4.5 retina AGGAAGGGGG (9) 2 0.002 P4.5 retina GACAAAGTGT (2) 2 0.002 P4.5 retina GGACAGAGGC (8) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina ACAAGTGTCC (3) 15 0.015 P6.5 retina TCTGGCTGGA (5) 15 0.015 P6.5 retina GGGACAGAGG (5) 11.7 0.0117 P6.5 retina TTTCCTTCAA (5) 10 0.01 P6.5 retina AAAGCAAAAA (9) 8.3 0.0083 P6.5 retina AAACCCCACT 5 0.005 P6.5 retina ACAAGTGCTC (2) 5 0.005 P6.5 retina AGCTGGGACC 5 0.005 P6.5 retina GGTCATCTTC (2) 5 0.005 P6.5 retina AATTCATTAA (2) 3.3 0.0033 P6.5 retina GACAAAGTGT (2) 3.3 0.0033 P6.5 retina AAAGCCAAAA (6) 1.7 0.0017 P6.5 retina CAATGGTCAA (2) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TTTCCTTCAA (5) 35.3 0.0353 P10.5 crx- retina ACAAGTGTCC (3) 22.3 0.0223 P10.5 crx- retina GACAAAGTGT (2) 11.1 0.0111 P10.5 crx- retina GGTCATCTTC (2) 7.4 0.0074 P10.5 crx- retina TCTGGCTGGA (5) 7.4 0.0074 P10.5 crx- retina AAAGCAAAAT (7) 5.6 0.0056 P10.5 crx- retina AGCTGGGACC 5.6 0.0056 P10.5 crx- retina GGGACAGAGG (5) 5.6 0.0056 P10.5 crx- retina AAACCCCACT 3.7 0.0037 P10.5 crx- retina GCCATCTTCC (8) 3.7 0.0037 P10.5 crx- retina AAAGCAAAAA (9) 1.9 0.0019 P10.5 crx- retina ACAAGTGCTC (2) 1.9 0.0019 P10.5 crx- retina AGGAAGGGGG (9) 1.9 0.0019 P10.5 crx- retina CAATGGTCAA (2) 1.9 0.0019 P10.5 crx- retina CCATTTACTC (3) 1.9 0.0019 P10.5 crx- retina GATGTCCTCA (3) 1.9 0.0019 P10.5 crx- retina GGGGACAGAG (5) 1.9 0.0019 P10.5 crx- retina TCCTCCACCA (8) 1.9 0.0019 P10.5 crx+ retina GGGACAGAGG (5) 267.2 0.2672 P10.5 crx+ retina ACAAGTGTCC (3) 178.8 0.1788 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AAACCCCACT 57.7 0.0577 P10.5 crx+ retina TCTGGCTGGA (5) 53.8 0.0538 P10.5 crx+ retina TTTCCTTCAA (5) 26.9 0.0269 P10.5 crx+ retina AAAGCAAAAA (9) 15.4 0.0154 P10.5 crx+ retina AGCTGGGACC 15.4 0.0154 P10.5 crx+ retina CAGAGTTGGG 15.4 0.0154 P10.5 crx+ retina GGTCATCTTC (2) 11.5 0.0115 P10.5 crx+ retina AAAGCAAAAT (7) 7.7 0.0077 P10.5 crx+ retina AATTCATTAA (2) 7.7 0.0077 P10.5 crx+ retina ACAAGTGCTC (2) 7.7 0.0077 P10.5 crx+ retina GATCCAGTTC 5.8 0.0058 P10.5 crx+ retina CAGGCTCCCT (4) 3.8 0.0038 P10.5 crx+ retina GACAAAGTGT (2) 3.8 0.0038 P10.5 crx+ retina GCTGCCACAC (4) 3.8 0.0038 P10.5 crx+ retina AGGAAGGGGG (9) 1.9 0.0019 P10.5 crx+ retina CAGCATCCCC (3) 1.9 0.0019 P10.5 crx+ retina GCCATCTTCC (8) 1.9 0.0019 P10.5 crx+ retina GGGGACAGAG (5) 1.9 0.0019 P10.5 crx+ retina TTGAACAAGC 1.9 0.0019 Adult retinal TCTGGCTGGA (5) 551.8 0.5518 Adult retinal GGGACAGAGG (5) 488.8 0.4888 Adult retinal ACAAGTGTCC (3) 481.4 0.4814 Adult retinal AAACCCCACT 159.2 0.1592 Adult retinal AGCTGGGACC 159.2 0.1592 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CAGAGTTGGG 29.6 0.0296 Adult retinal CCCAGTTCAC (3) 16.7 0.0167 Adult retinal AAAGCAAAAA (9) 14.8 0.0148 Adult retinal ACAAGTGCTC (2) 13 0.013 Adult retinal AATTCATTAA (2) 11.1 0.0111 Adult retinal TTGAACAAGC 9.3 0.0093 Adult retinal TTTCCTTCAA (5) 9.3 0.0093 Adult retinal AAAGCAAAAT (7) 7.4 0.0074 Adult retinal GATCCAGTTC 7.4 0.0074 Adult retinal GGACAGAGGC (8) 7.4 0.0074 Adult retinal TCTCTCAGCC 7.4 0.0074 Adult retinal TCTGGCTGGG (5) 7.4 0.0074 Adult retinal GACAAAGTGT (2) 5.6 0.0056 Adult retinal ACTCTGCCAG 3.7 0.0037 Adult retinal CAATGGTCAA (2) 3.7 0.0037 Adult retinal GGGGACAGAG (5) 3.7 0.0037 Adult retinal GGTCATCTTC (2) 3.7 0.0037 Adult retinal GTCTTCGGAG (2) 3.7 0.0037 Adult retinal CCATTTACTC (3) 1.9 0.0019 Adult retinal GATGTCCTCA (3) 1.9 0.0019 Adult retinal GCCATCTTCC (8) 1.9 0.0019 Adult retinal GCTGCCACAC (4) 1.9 0.0019 ONL GGGACAGAGG (5) 879.2 0.8792 ONL ACAAGTGTCC (3) 609.1 0.6091 ONL TCTGGCTGGA (5) 356.3 0.3563 ONL AAACCCCACT 216.4 0.2164 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AATTCATTAA (2) 72.8 0.0728 ONL AGCTGGGACC 51.7 0.0517 ONL CAGAGTTGGG 30.6 0.0306 ONL AAAGCAAAAA (9) 21.1 0.0211 ONL AAAGCAAAAT (7) 21.1 0.0211 ONL ACAAGTGCTC (2) 19.2 0.0192 ONL GATCCAGTTC 13.4 0.0134 ONL TTTCCTTCAA (5) 11.5 0.0115 ONL CAGGCTCCCT (4) 7.7 0.0077 ONL GAAACTGGGA (6) 5.7 0.0057 ONL TTGAACAAGC 5.7 0.0057 ONL GATGTCCTCA (3) 3.8 0.0038 ONL GCCATCTTCC (8) 3.8 0.0038 ONL GGGGACAGAG (5) 3.8 0.0038 ONL TCTCTCAGCC 3.8 0.0038 ONL ACTCTGCCAG 1.9 0.0019 ONL CCCAGTTCAC (3) 1.9 0.0019 ONL GACAAAGTGT (2) 1.9 0.0019 ONL GCTGCCACAC (4) 1.9 0.0019 ONL GGACAGAGGC (8) 1.9 0.0019 ONL GGTCATCTTC (2) 1.9 0.0019 ONL GTCTTCGGAG (2) 1.9 0.0019