Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.296520	Vps35	vacuolar protein sorting 35	8	8 38.0 cM	65114
Gene Ontology	integral to membrane | protein transport | secretory pathway | transport | vacuolar protein processing/maturation
Human Homolog	VPS35[vacuolar protein sorting 35 (yeast)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 100 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GCCTTCCAAT (3) 223.5 0.2235 P8 Cb GC GTCAGAAGCA 13.1 0.0131 P8 Cb GC GTGGTTGAAA (8) 9.8 0.0098 P8 Cb GC GCCCCCACAC (4) 1.6 0.0016 Cb medulloblastoma GCCTTCCAAT (3) 115.6 0.1156 Cb medulloblastoma GTCAGAAGCA 11.6 0.0116 Cb medulloblastoma GTGGTTGAAA (8) 4.6 0.0046 Cb medulloblastoma TGCACTGCTG (5) 4.6 0.0046 Cb medulloblastoma CATTAAAAAA (3) 2.3 0.0023 P8 GC+1d culture GCCTTCCAAT (3) 114.2 0.1142 P8 GC+1d culture GTCAGAAGCA 9.1 0.0091 P8 GC+1d culture GTGGTTGAAA (8) 6.8 0.0068 P8 GC+1d culture GATTTGTACT (2) 1.1 0.0011 P8 GC+1d culture TGCACTGCTG (5) 1.1 0.0011 P8 GC+SHH+1d culture GCCTTCCAAT (3) 144 0.144 P8 GC+SHH+1d culture GTGGTTGAAA (8) 9.4 0.0094 P8 GC+SHH+1d culture GTCAGAAGCA 3.5 0.0035 P8 GC+SHH+1d culture GATTTGTACT (2) 1.2 0.0012 P8 GC+SHH+1d culture TGCACTGCTG (5) 1.2 0.0012 3T3 fibroblasts GCCTTCCAAT (3) 21 0.021 3T3 fibroblasts GCGACTCCAG (2) 3.5 0.0035 3T3 fibroblasts GGATTTGTAC (4) 3.5 0.0035 3T3 fibroblasts GTCAGAAGCA 3.5 0.0035 3T3 fibroblasts TGCACTGCTG (5) 3.5 0.0035 E15 cortex GCCTTCCAAT (3) 59.4 0.0594 E15 cortex GTGGTTGAAA (8) 34.6 0.0346 E15 cortex GGATTTGTAC (4) 4.9 0.0049 E15 cortex GTCAGAAGCA 4.9 0.0049 P1 cortex GCCTTCCAAT (3) 27.3 0.0273 P1 cortex GTGGTTGAAA (8) 9.1 0.0091 P1 cortex ACTGATCTGC 4.5 0.0045 P1 cortex GTCAGAAGCA 4.5 0.0045 Hypothalamus GCCTTCCAAT (3) 56.1 0.0561 Hypothalamus GTGGTTGAAA (8) 14.5 0.0145 Hypothalamus GTCAGAAGCA 3.6 0.0036 Hypothalamus CATTAAAAAA (3) 1.8 0.0018 Hypothalamus GGATTTGTAC (4) 1.8 0.0018 E12.5 retina GCCTTCCAAT (3) 101.4 0.1014 E12.5 retina GTGGTTGAAA (8) 28.2 0.0282 E12.5 retina GATTTGTACT (2) 26.3 0.0263 E12.5 retina GTCAGAAGCA 1.9 0.0019 E12.5 retina TGCACTGCTG (5) 1.9 0.0019 E14.5 retina GCCTTCCAAT (3) 107.5 0.1075 E14.5 retina GTGGTTGAAA (8) 23.7 0.0237 E14.5 retina ACTGATCTGC 1.8 0.0018 E14.5 retina GGATTTGTAC (4) 1.8 0.0018 E14.5 retina GTCAGAAGCA 1.8 0.0018 E14.5 retina TTGACCAAAA (3) 1.8 0.0018 E16.5 retina GCCTTCCAAT (3) 77.9 0.0779 E16.5 retina GTGGTTGAAA (8) 23.5 0.0235 E16.5 retina GTCAGAAGCA 16.3 0.0163 E16.5 retina ACTGATCTGC 1.8 0.0018 E16.5 retina TTGACCAAAA (3) 1.8 0.0018 E18.5 retina GCCTTCCAAT (3) 203.7 0.2037 E18.5 retina GTGGTTGAAA (8) 61.8 0.0618 E18.5 retina GGATTTGTAC (4) 3.6 0.0036 E18.5 retina ACTGATCTGC 1.8 0.0018 E18.5 retina TGCACTGCTG (5) 1.8 0.0018 P0.5 retina GATTTGTACT (2) 137.4 0.1374 P0.5 retina GCCTTCCAAT (3) 84.4 0.0844 P0.5 retina GTGGTTGAAA (8) 17.7 0.0177 P0.5 retina GTCAGAAGCA 7.9 0.0079 P0.5 retina GGATTTGTAC (4) 5.9 0.0059 P0.5 retina CATTAAAAAA (3) 3.9 0.0039 P2.5 retina GCCTTCCAAT (3) 184.8 0.1848 P2.5 retina GTGGTTGAAA (8) 19.4 0.0194 P2.5 retina ACTGATCTGC 1.8 0.0018 P2.5 retina GGATTTGTAC (4) 1.8 0.0018 P2.5 retina GTCAGAAGCA 1.8 0.0018 P4.5 retina GCCTTCCAAT (3) 225.9 0.2259 P4.5 retina GTGGTTGAAA (8) 17.8 0.0178 P4.5 retina GTCAGAAGCA 9.9 0.0099 P6.5 retina GCCTTCCAAT (3) 173.4 0.1734 P6.5 retina GTGGTTGAAA (8) 11.7 0.0117 P6.5 retina GTCAGAAGCA 6.7 0.0067 P6.5 retina TGCACTGCTG (5) 1.7 0.0017 P10.5 crx- retina GCCTTCCAAT (3) 46.4 0.0464 P10.5 crx- retina GTCAGAAGCA 18.6 0.0186 P10.5 crx- retina GATTTGTACT (2) 9.3 0.0093 P10.5 crx- retina TGCACTGCTG (5) 3.7 0.0037 P10.5 crx- retina GCGACTCCAG (2) 1.9 0.0019 P10.5 crx- retina GTGGTTGAAA (8) 1.9 0.0019 P10.5 crx+ retina GCCTTCCAAT (3) 111.5 0.1115 P10.5 crx+ retina GTCAGAAGCA 11.5 0.0115 P10.5 crx+ retina GATTTGTACT (2) 5.8 0.0058 P10.5 crx+ retina GTGGTTGAAA (8) 3.8 0.0038 P10.5 crx+ retina ACTGATCTGC 1.9 0.0019 P10.5 crx+ retina TGCACTGCTG (5) 1.9 0.0019 P10.5 crx+ retina TTGACCAAAA (3) 1.9 0.0019 Adult retinal GCCTTCCAAT (3) 105.5 0.1055 Adult retinal GTCAGAAGCA 9.3 0.0093 Adult retinal GCGACTCCAG (2) 3.7 0.0037 Adult retinal GTGGTTGAAA (8) 3.7 0.0037 Adult retinal GATTTGTACT (2) 1.9 0.0019 Adult retinal GGATTTGTAC (4) 1.9 0.0019 ONL GCCTTCCAAT (3) 118.8 0.1188 ONL GCAGAAGCAG (7) 5.7 0.0057 ONL GTCAGAAGCA 5.7 0.0057 ONL CATTAAAAAA (3) 1.9 0.0019 ONL TTGACCAAAA (3) 1.9 0.0019