Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.297883	Clcn4-2	chloride channel 4-2	7	7 4.0 cM	12727
Gene Ontology	chloride transport | integral to membrane | ion channel activity | ion transport | membrane | voltage-gated chloride channel activity | voltage-gated ion channel activity
Human Homolog	CLCN4[chloride channel 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 182 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC TCAAAAAAAA (60) 17.9 0.0179 P8 Cb GC TTCTTGACTT (5) 16.3 0.0163 P8 Cb GC TACTATTTTC (3) 4.9 0.0049 P8 Cb GC TTTAATTAGC (2) 4.9 0.0049 P8 Cb GC GGGCTGCTGG (11) 3.3 0.0033 P8 Cb GC GGGGTGTGAA (2) 3.3 0.0033 P8 Cb GC TCCAAAAAAA (8) 3.3 0.0033 P8 Cb GC ACTTTTTTTT (9) 1.6 0.0016 P8 Cb GC CTACTGTTAG 1.6 0.0016 P8 Cb GC TTTCTCAAAA (4) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma TCAAAAAAAA (60) 99.4 0.0994 Cb medulloblastoma TTCTTGACTT (5) 9.2 0.0092 Cb medulloblastoma TCCAAAAAAA (8) 6.9 0.0069 Cb medulloblastoma TCCCTGCAAA (3) 4.6 0.0046 Cb medulloblastoma TTTCTCAAAA (4) 4.6 0.0046 Cb medulloblastoma ACTTTTTTTT (9) 2.3 0.0023 Cb medulloblastoma CTACTGTTAG 2.3 0.0023 Cb medulloblastoma GCTGAACTCT (2) 2.3 0.0023 Cb medulloblastoma TACTATTTTC (3) 2.3 0.0023 Cb medulloblastoma TCCCAAAAAA (7) 2.3 0.0023 Cb medulloblastoma TGCAATACTT (7) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture TTCTTGACTT (5) 26.3 0.0263 P8 GC+1d culture TCAAAAAAAA (60) 17.1 0.0171 P8 GC+1d culture TTTAATTAGC (2) 4.6 0.0046 P8 GC+1d culture TACTATTTTC (3) 3.4 0.0034 P8 GC+1d culture GGGGTGTGAA (2) 2.3 0.0023 P8 GC+1d culture TCCAAAAAAA (8) 2.3 0.0023 P8 GC+1d culture ACTTTTTTTT (9) 1.1 0.0011 P8 GC+1d culture CTACTGTTAG 1.1 0.0011 P8 GC+1d culture GCCAGTCCAG 1.1 0.0011 P8 GC+1d culture TCCCTGCAAA (3) 1.1 0.0011 P8 GC+1d culture TGCAATACTT (7) 1.1 0.0011 P8 GC+1d culture TTTCTCAAAA (4) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture TCAAAAAAAA (60) 51.5 0.0515 P8 GC+SHH+1d culture TTCTTGACTT (5) 17.6 0.0176 P8 GC+SHH+1d culture TCCAAAAAAA (8) 5.9 0.0059 P8 GC+SHH+1d culture TACTATTTTC (3) 4.7 0.0047 P8 GC+SHH+1d culture TCCCTGCAAA (3) 3.5 0.0035 P8 GC+SHH+1d culture TTTCTCAAAA (4) 3.5 0.0035 P8 GC+SHH+1d culture GGGGTGTGAA (2) 2.3 0.0023 P8 GC+SHH+1d culture TTTAATTAGC (2) 2.3 0.0023 P8 GC+SHH+1d culture GCCAGTCCAG 1.2 0.0012 P8 GC+SHH+1d culture TCCCTGAAAA (3) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts TCAAAAAAAA (60) 7 0.007 3T3 fibroblasts GGGGTGTGAA (2) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex TCAAAAAAAA (60) 14.8 0.0148 E15 cortex GGGGTGTGAA (2) 4.9 0.0049 E15 cortex TTCTTGACTT (5) 4.9 0.0049 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex TCAAAAAAAA (60) 22.7 0.0227 P1 cortex GCCAGTCCAG 4.5 0.0045 P1 cortex TCCCTAAAAA (3) 4.5 0.0045 P1 cortex TTCTTGACTT (5) 4.5 0.0045 P1 cortex TTTAATTAGC (2) 4.5 0.0045 P1 cortex TTTCTCAAAA (4) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus TCAAAAAAAA (60) 39.8 0.0398 Hypothalamus TTCTTGACTT (5) 9.1 0.0091 Hypothalamus GGGGTGTGAA (2) 3.6 0.0036 Hypothalamus TACTATTTTC (3) 3.6 0.0036 Hypothalamus TCCAAAAAAA (8) 3.6 0.0036 Hypothalamus TTTCTCAAAA (4) 3.6 0.0036 Hypothalamus ATGAGGAGTG 1.8 0.0018 Hypothalamus GCCAGTCCAG 1.8 0.0018 Hypothalamus GGGCTGCTGG (11) 1.8 0.0018 Hypothalamus TCCCTGCAAA (3) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina TCAAAAAAAA (60) 18.8 0.0188 E12.5 retina TTTCTCAAAA (4) 13.1 0.0131 E12.5 retina TACTATTTTC (3) 11.3 0.0113 E12.5 retina TTCTTGACTT (5) 11.3 0.0113 E12.5 retina GGGGTGTGAA (2) 3.8 0.0038 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina TCAAAAAAAA (60) 41.9 0.0419 E14.5 retina TTCTTGACTT (5) 23.7 0.0237 E14.5 retina TTTCTCAAAA (4) 3.6 0.0036 E14.5 retina ACTGTGGAGG (5) 1.8 0.0018 E14.5 retina TACTATTTTC (3) 1.8 0.0018 E14.5 retina TATGTAGAAA (5) 1.8 0.0018 E14.5 retina TCCCAAAAAA (7) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina TCAAAAAAAA (60) 18.1 0.0181 E16.5 retina TTCTTGACTT (5) 18.1 0.0181 E16.5 retina TTTCTCAAAA (4) 7.2 0.0072 E16.5 retina GCCAGTCCAG 3.6 0.0036 E16.5 retina GGGGTGTGAA (2) 3.6 0.0036 E16.5 retina TCCCTGCAAA (3) 3.6 0.0036 E16.5 retina GCTGAACTCT (2) 1.8 0.0018 E16.5 retina GGGCTGCTGG (11) 1.8 0.0018 E16.5 retina TACTATTTTC (3) 1.8 0.0018 E16.5 retina TCCCTGAAAA (3) 1.8 0.0018 E16.5 retina TTTAATTAGC (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina TCAAAAAAAA (60) 49.1 0.0491 E18.5 retina TTCTTGACTT (5) 14.6 0.0146 E18.5 retina TACTATTTTC (3) 12.7 0.0127 E18.5 retina TCCAAAAAAA (8) 5.5 0.0055 E18.5 retina TCCCTGCAAA (3) 5.5 0.0055 E18.5 retina TCCCAAAAAA (7) 3.6 0.0036 E18.5 retina ACTGTGGAGG (5) 1.8 0.0018 E18.5 retina ATGAGGAGTG 1.8 0.0018 E18.5 retina CTACTGTTAG 1.8 0.0018 E18.5 retina GGGGTGTGAA (2) 1.8 0.0018 E18.5 retina TATGTAGAAA (5) 1.8 0.0018 E18.5 retina TGCAATACTT (7) 1.8 0.0018 E18.5 retina TTTCTCAAAA (4) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina TCAAAAAAAA (60) 31.4 0.0314 P0.5 retina TTCTTGACTT (5) 9.8 0.0098 P0.5 retina TTTCTCAAAA (4) 3.9 0.0039 P0.5 retina ACTGTGGAGG (5) 2 0.002 P0.5 retina TCCCAAAAAA (7) 2 0.002 P0.5 retina TCCCTAAAAA (3) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina TCAAAAAAAA (60) 35.2 0.0352 P2.5 retina TACTATTTTC (3) 8.8 0.0088 P2.5 retina TTCTTGACTT (5) 8.8 0.0088 P2.5 retina TTTCTCAAAA (4) 7 0.007 P2.5 retina CTACTGTTAG 1.8 0.0018 P2.5 retina GGGGTGTGAA (2) 1.8 0.0018 P2.5 retina TCCAAAAAAA (8) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina TCAAAAAAAA (60) 37.6 0.0376 P4.5 retina TTCTTGACTT (5) 13.9 0.0139 P4.5 retina TCCCTGCAAA (3) 5.9 0.0059 P4.5 retina GGGGTGTGAA (2) 4 0.004 P4.5 retina TCCAAAAAAA (8) 4 0.004 P4.5 retina TTTAATTAGC (2) 4 0.004 P4.5 retina TTTCTCAAAA (4) 4 0.004 P4.5 retina TACTATTTTC (3) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina TCAAAAAAAA (60) 31.7 0.0317 P6.5 retina TTCTTGACTT (5) 23.3 0.0233 P6.5 retina TCCCTGAAAA (3) 5 0.005 P6.5 retina TCCAAAAAAA (8) 3.3 0.0033 P6.5 retina TCCCTGCAAA (3) 3.3 0.0033 P6.5 retina TTTAATTAGC (2) 3.3 0.0033 P6.5 retina GGGCTGCTGG (11) 1.7 0.0017 P6.5 retina TCCCTAAAAA (3) 1.7 0.0017 P6.5 retina TTTCTCAAAA (4) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina TCAAAAAAAA (60) 14.9 0.0149 P10.5 crx- retina TTCTTGACTT (5) 13 0.013 P10.5 crx- retina TACTATTTTC (3) 5.6 0.0056 P10.5 crx- retina TTTCTCAAAA (4) 5.6 0.0056 P10.5 crx- retina GGGGTGTGAA (2) 1.9 0.0019 P10.5 crx- retina TATGTAGAAA (5) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina TCAAAAAAAA (60) 17.3 0.0173 P10.5 crx+ retina TACTATTTTC (3) 5.8 0.0058 P10.5 crx+ retina GGGGTGTGAA (2) 3.8 0.0038 P10.5 crx+ retina TCCCAAAAAA (7) 3.8 0.0038 P10.5 crx+ retina TCCCTGCAAA (3) 3.8 0.0038 P10.5 crx+ retina GCTGAACTCT (2) 1.9 0.0019 P10.5 crx+ retina TCCCTGAAAA (3) 1.9 0.0019 P10.5 crx+ retina TTCTTGACTT (5) 1.9 0.0019 P10.5 crx+ retina TTTCTCAAAA (4) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal TCAAAAAAAA (60) 20.4 0.0204 Adult retinal TTCTTGACTT (5) 9.3 0.0093 Adult retinal ATGAGGAGTG 3.7 0.0037 Adult retinal TCCAAAAAAA (8) 3.7 0.0037 Adult retinal TCCCTGCAAA (3) 3.7 0.0037 Adult retinal TTTAATTAGC (2) 3.7 0.0037 Adult retinal GCCAGTCCAG 1.9 0.0019 Adult retinal TGCAATACTT (7) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL TCAAAAAAAA (60) 15.3 0.0153 ONL TTTCTCAAAA (4) 5.7 0.0057 ONL ATGAGGAGTG 3.8 0.0038 ONL TCCCTAAAAA (3) 3.8 0.0038 ONL ACTTTTTTTT (9) 1.9 0.0019 ONL TACTATTTTC (3) 1.9 0.0019 ONL TCCCTGCAAA (3) 1.9 0.0019 ONL TTCTTGACTT (5) 1.9 0.0019 ONL TTTAATTAGC (2) 1.9 0.0019