Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.297976	Gpc1	glypican 1	1		14733
Gene Ontology	extracellular matrix | extracellular space
Human Homolog	GPC1[glypican 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 114 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAAAAAAAA (196) 47.3 0.0473 P8 Cb GC CAAGCTCATC (2) 3.3 0.0033 P8 Cb GC ATAGCCTTCT 1.6 0.0016 P8 Cb GC CAGAAGGCCT (4) 1.6 0.0016 P8 Cb GC CTGTACAGGG (3) 1.6 0.0016 P8 Cb GC TTTTGGCCAA (5) 1.6 0.0016 Cb medulloblastoma TAAAAAAAAA (196) 106.4 0.1064 Cb medulloblastoma AGTCCTGCCA (6) 13.9 0.0139 Cb medulloblastoma CTGTACAGGG (3) 4.6 0.0046 Cb medulloblastoma TTTTGGCCAA (5) 4.6 0.0046 Cb medulloblastoma ACCTCAAAAA 2.3 0.0023 Cb medulloblastoma CAGAAGGCCT (4) 2.3 0.0023 Cb medulloblastoma GGCCCAACAA (5) 2.3 0.0023 P8 GC+1d culture TAAAAAAAAA (196) 66.2 0.0662 P8 GC+1d culture CTGTACAGGG (3) 4.6 0.0046 P8 GC+1d culture ACCTCAAAAA 2.3 0.0023 P8 GC+1d culture AGTCCTGCCA (6) 2.3 0.0023 P8 GC+1d culture ATAGCCTTCT 2.3 0.0023 P8 GC+1d culture GGCCCAACAA (5) 2.3 0.0023 P8 GC+1d culture CAAGCTCATC (2) 1.1 0.0011 P8 GC+1d culture GGGATGCTGG (7) 1.1 0.0011 P8 GC+SHH+1d culture TAAAAAAAAA (196) 93.7 0.0937 P8 GC+SHH+1d culture CTGTACAGGG (3) 8.2 0.0082 P8 GC+SHH+1d culture CAGAAGGCCT (4) 7 0.007 P8 GC+SHH+1d culture GGCCCAACAA (5) 7 0.007 P8 GC+SHH+1d culture ACCTCAAAAA 3.5 0.0035 P8 GC+SHH+1d culture AGTCCTGCCA (6) 1.2 0.0012 P8 GC+SHH+1d culture ATAGCCTTCT 1.2 0.0012 P8 GC+SHH+1d culture GGGATGCTGG (7) 1.2 0.0012 P8 GC+SHH+1d culture GGTGCTGCTG (2) 1.2 0.0012 3T3 fibroblasts CAGAAGGCCT (4) 7 0.007 3T3 fibroblasts CTGTACAGGG (3) 7 0.007 3T3 fibroblasts TAAAAAAAAA (196) 7 0.007 3T3 fibroblasts CAAGCTCATC (2) 3.5 0.0035 E15 cortex CAAGCTCATC (2) 9.9 0.0099 E15 cortex TAAAAAAAAA (196) 9.9 0.0099 E15 cortex CTGTACAGGG (3) 4.9 0.0049 E15 cortex GGGATGCTGG (7) 4.9 0.0049 P1 cortex TAAAAAAAAA (196) 50 0.05 P1 cortex GGCCCAACAA (5) 9.1 0.0091 P1 cortex CAAGCTCATC (2) 4.5 0.0045 P1 cortex CAGAAGGCCT (4) 4.5 0.0045 P1 cortex TCTGCTGATG (9) 4.5 0.0045 Hypothalamus TAAAAAAAAA (196) 32.6 0.0326 Hypothalamus AGTCCTGCCA (6) 5.4 0.0054 Hypothalamus ACCTCAAAAA 3.6 0.0036 Hypothalamus CAAGCTCATC (2) 1.8 0.0018 Hypothalamus GGCCCAACAA (5) 1.8 0.0018 Hypothalamus GGGATGCTGG (7) 1.8 0.0018 E12.5 retina TAAAAAAAAA (196) 24.4 0.0244 E12.5 retina CTGTACAGGG (3) 5.6 0.0056 E12.5 retina ACCTCAAAAA 1.9 0.0019 E12.5 retina CAAGCTCATC (2) 1.9 0.0019 E12.5 retina CAGAAGGCCT (4) 1.9 0.0019 E12.5 retina GGCCCAACAA (5) 1.9 0.0019 E12.5 retina TCTGCTGATG (9) 1.9 0.0019 E14.5 retina TAAAAAAAAA (196) 41.9 0.0419 E14.5 retina ACCTCAAAAA 3.6 0.0036 E14.5 retina GGCCCAACAA (5) 3.6 0.0036 E14.5 retina TTTTGGCCAA (5) 1.8 0.0018 E16.5 retina TAAAAAAAAA (196) 23.5 0.0235 E16.5 retina CAGAAGGCCT (4) 1.8 0.0018 E16.5 retina CTGTACAGGG (3) 1.8 0.0018 E16.5 retina GGCCCAACAA (5) 1.8 0.0018 E16.5 retina GGTGCTGCTG (2) 1.8 0.0018 E18.5 retina TAAAAAAAAA (196) 107.3 0.1073 E18.5 retina GGCCCAACAA (5) 3.6 0.0036 E18.5 retina CAAGCTCATC (2) 1.8 0.0018 E18.5 retina TTTTGGCCAA (5) 1.8 0.0018 P0.5 retina TAAAAAAAAA (196) 37.3 0.0373 P0.5 retina CTGTACAGGG (3) 5.9 0.0059 P0.5 retina GGTGCTGCTG (2) 5.9 0.0059 P0.5 retina AGTCCTGCCA (6) 2 0.002 P0.5 retina CAGAAGGCCT (4) 2 0.002 P0.5 retina GGCCCAACAA (5) 2 0.002 P0.5 retina GGGATGCTGG (7) 2 0.002 P0.5 retina TTTTGGCCAA (5) 2 0.002 P2.5 retina TAAAAAAAAA (196) 72.2 0.0722 P2.5 retina CAGAAGGCCT (4) 5.3 0.0053 P2.5 retina CTGTACAGGG (3) 5.3 0.0053 P2.5 retina GGCCCAACAA (5) 3.5 0.0035 P2.5 retina ACCTCAAAAA 1.8 0.0018 P2.5 retina GGTGCTGCTG (2) 1.8 0.0018 P4.5 retina TAAAAAAAAA (196) 122.8 0.1228 P4.5 retina GGCCCAACAA (5) 4 0.004 P4.5 retina ACCTCAAAAA 2 0.002 P4.5 retina AGTCCTGCCA (6) 2 0.002 P4.5 retina CAAGCTCATC (2) 2 0.002 P4.5 retina TCTGCTGATG (9) 2 0.002 P6.5 retina TAAAAAAAAA (196) 63.4 0.0634 P6.5 retina CTGTACAGGG (3) 6.7 0.0067 P6.5 retina CAGAAGGCCT (4) 5 0.005 P6.5 retina AGTCCTGCCA (6) 1.7 0.0017 P6.5 retina CAAGCTCATC (2) 1.7 0.0017 P6.5 retina GGCCCAACAA (5) 1.7 0.0017 P6.5 retina TTTTGGCCAA (5) 1.7 0.0017 P10.5 crx- retina TAAAAAAAAA (196) 9.3 0.0093 P10.5 crx- retina AGTCCTGCCA (6) 3.7 0.0037 P10.5 crx- retina GGCCCAACAA (5) 3.7 0.0037 P10.5 crx- retina CAGAAGGCCT (4) 1.9 0.0019 P10.5 crx- retina CTGTACAGGG (3) 1.9 0.0019 P10.5 crx- retina GGGATGCTGG (7) 1.9 0.0019 P10.5 crx+ retina TAAAAAAAAA (196) 25 0.025 P10.5 crx+ retina AGTCCTGCCA (6) 1.9 0.0019 P10.5 crx+ retina CAGAAGGCCT (4) 1.9 0.0019 P10.5 crx+ retina GGCCCAACAA (5) 1.9 0.0019 Adult retinal TAAAAAAAAA (196) 18.5 0.0185 Adult retinal CAAGCTCATC (2) 7.4 0.0074 Adult retinal AGTCCTGCCA (6) 3.7 0.0037 Adult retinal GGGATGCTGG (7) 1.9 0.0019 ONL TAAAAAAAAA (196) 28.7 0.0287 ONL GGCCCAACAA (5) 1.9 0.0019 ONL GGGATGCTGG (7) 1.9 0.0019 ONL TTTTGGCCAA (5) 1.9 0.0019