Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.29890	Shmt2	serine hydroxymethyl transferase 2 (mitochondrial)	10		108037
Gene Ontology	glycine hydroxymethyltransferase activity | methyltransferase activity | mitochondrion | mitochondrion | mitochondrion | one-carbon compound metabolism | transferase activity
Human Homolog	SHMT2[serine hydroxymethyltransferase 2 (mitochondrial)]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 122 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAGGTGGAAG (5) 94.6 0.0946 P8 Cb GC GCTGCCAGGG (2) 21.2 0.0212 P8 Cb GC TTGTAAAATA (5) 3.3 0.0033 P8 Cb GC ACACCCAACT 1.6 0.0016 P8 Cb GC ACACCCGACT (2) 1.6 0.0016 Cb medulloblastoma AAGGTGGAAG (5) 27.7 0.0277 Cb medulloblastoma GCTGCCAGGG (2) 18.5 0.0185 Cb medulloblastoma TTGTAAAATA (5) 2.3 0.0023 P8 GC+1d culture AAGGTGGAAG (5) 97 0.097 P8 GC+1d culture GCTGCCAGGG (2) 25.1 0.0251 P8 GC+1d culture ACACCCAACT 2.3 0.0023 P8 GC+1d culture ACACCCGACT (2) 2.3 0.0023 P8 GC+1d culture CAGTGGGCTT (3) 2.3 0.0023 P8 GC+1d culture GCTGCCCGGC (5) 2.3 0.0023 P8 GC+1d culture AAAGAGTCTG (4) 1.1 0.0011 P8 GC+1d culture GCCCACATCA (3) 1.1 0.0011 P8 GC+1d culture GGGAAGCCCC (3) 1.1 0.0011 P8 GC+SHH+1d culture AAGGTGGAAG (5) 92.5 0.0925 P8 GC+SHH+1d culture GCTGCCAGGG (2) 28.1 0.0281 P8 GC+SHH+1d culture ACACCCGACT (2) 3.5 0.0035 P8 GC+SHH+1d culture CAGCCTGGGA (2) 2.3 0.0023 P8 GC+SHH+1d culture GTGCAAACCT 1.2 0.0012 3T3 fibroblasts AAGGTGGAAG (5) 101.6 0.1016 3T3 fibroblasts GCTGCCAGGG (2) 59.6 0.0596 3T3 fibroblasts ACACCCGACT (2) 21 0.021 3T3 fibroblasts AAAGAGTCTG (4) 3.5 0.0035 3T3 fibroblasts GCCCACATCA (3) 3.5 0.0035 3T3 fibroblasts GCTGCCCGGC (5) 3.5 0.0035 E15 cortex AAGGTGGAAG (5) 39.6 0.0396 E15 cortex GCTGCCAGGG (2) 34.6 0.0346 E15 cortex ACACCCGACT (2) 9.9 0.0099 E15 cortex GCTGCCCAGG (10) 4.9 0.0049 P1 cortex AAGGTGGAAG (5) 31.8 0.0318 P1 cortex GCTGCCAGGG (2) 13.6 0.0136 P1 cortex AAAGAGTCTG (4) 4.5 0.0045 P1 cortex ACACCCGACT (2) 4.5 0.0045 P1 cortex GCCCACATCA (3) 4.5 0.0045 Hypothalamus AAGGTGGAAG (5) 23.5 0.0235 Hypothalamus GCTGCCAGGG (2) 14.5 0.0145 Hypothalamus GGCCACATCA (6) 7.2 0.0072 Hypothalamus GCCCACATCA (3) 5.4 0.0054 Hypothalamus GCTGCCCGGC (5) 1.8 0.0018 E12.5 retina AAGGTGGAAG (5) 200.9 0.2009 E12.5 retina GCTGCCAGGG (2) 15 0.015 E12.5 retina ACACCCGACT (2) 11.3 0.0113 E12.5 retina CAGTGGGCTT (3) 3.8 0.0038 E12.5 retina CAGCCTGGGA (2) 1.9 0.0019 E12.5 retina GCCCACATCA (3) 1.9 0.0019 E12.5 retina GGGAAGCCCC (3) 1.9 0.0019 E14.5 retina AAGGTGGAAG (5) 63.8 0.0638 E14.5 retina GCTGCCAGGG (2) 14.6 0.0146 E14.5 retina GGGAAGCCCC (3) 7.3 0.0073 E14.5 retina CAGTGGGCTT (3) 3.6 0.0036 E14.5 retina ACACCCAACT 1.8 0.0018 E14.5 retina ACACCCGACT (2) 1.8 0.0018 E14.5 retina GCAGAGATAC 1.8 0.0018 E14.5 retina GCTGCCCGGC (5) 1.8 0.0018 E14.5 retina GGCCACATCA (6) 1.8 0.0018 E16.5 retina AAGGTGGAAG (5) 108.7 0.1087 E16.5 retina CAGTGGGCTT (3) 30.8 0.0308 E16.5 retina GCTGCCAGGG (2) 19.9 0.0199 E16.5 retina ACACCCGACT (2) 9.1 0.0091 E16.5 retina GCAGAGATAC 5.4 0.0054 E16.5 retina GCTGCCCAGG (10) 1.8 0.0018 E16.5 retina GGCCACATCA (6) 1.8 0.0018 E16.5 retina GGGAAGCCCC (3) 1.8 0.0018 E16.5 retina GTGCAAACCT 1.8 0.0018 E18.5 retina AAGGTGGAAG (5) 47.3 0.0473 E18.5 retina CAGTGGGCTT (3) 20 0.02 E18.5 retina GCTGCCAGGG (2) 20 0.02 E18.5 retina ACACCCGACT (2) 9.1 0.0091 E18.5 retina GCAGAGATAC 1.8 0.0018 E18.5 retina GGCCACATCA (6) 1.8 0.0018 P0.5 retina AAGGTGGAAG (5) 96.2 0.0962 P0.5 retina ACACCCGACT (2) 15.7 0.0157 P0.5 retina CAGTGGGCTT (3) 13.7 0.0137 P0.5 retina GCTGCCAGGG (2) 13.7 0.0137 P0.5 retina GCAGAGATAC 3.9 0.0039 P0.5 retina GCCCACATCA (3) 2 0.002 P0.5 retina TTGTAAAATA (5) 2 0.002 P2.5 retina AAGGTGGAAG (5) 58.1 0.0581 P2.5 retina CAGTGGGCTT (3) 29.9 0.0299 P2.5 retina GCTGCCAGGG (2) 22.9 0.0229 P2.5 retina ACACCCGACT (2) 8.8 0.0088 P2.5 retina AAAGAGTCTG (4) 1.8 0.0018 P2.5 retina GGCCACATCA (6) 1.8 0.0018 P4.5 retina AAGGTGGAAG (5) 43.6 0.0436 P4.5 retina GCTGCCAGGG (2) 33.7 0.0337 P4.5 retina CAGTGGGCTT (3) 25.8 0.0258 P4.5 retina ACACCCGACT (2) 5.9 0.0059 P4.5 retina AAAGAGTCTG (4) 2 0.002 P4.5 retina GCTGCCCGGC (5) 2 0.002 P4.5 retina GGCCACATCA (6) 2 0.002 P4.5 retina TTGTAAAATA (5) 2 0.002 P6.5 retina AAGGTGGAAG (5) 48.4 0.0484 P6.5 retina GCTGCCAGGG (2) 21.7 0.0217 P6.5 retina CAGTGGGCTT (3) 8.3 0.0083 P6.5 retina ACACCCGACT (2) 6.7 0.0067 P6.5 retina TTGTAAAATA (5) 3.3 0.0033 P6.5 retina GCTGCCCGGC (5) 1.7 0.0017 P10.5 crx- retina AAGGTGGAAG (5) 157.9 0.1579 P10.5 crx- retina ACACCCGACT (2) 3.7 0.0037 P10.5 crx- retina GCTGCCAGGG (2) 3.7 0.0037 P10.5 crx- retina GCTGCCCGGC (5) 3.7 0.0037 P10.5 crx- retina AAAGAGTCTG (4) 1.9 0.0019 P10.5 crx- retina GCTGCCCAGG (10) 1.9 0.0019 P10.5 crx- retina TTGTAAAATA (5) 1.9 0.0019 P10.5 crx+ retina AAGGTGGAAG (5) 57.7 0.0577 P10.5 crx+ retina GCTGCCAGGG (2) 25 0.025 P10.5 crx+ retina ACACCCGACT (2) 1.9 0.0019 P10.5 crx+ retina CAGTGGGCTT (3) 1.9 0.0019 P10.5 crx+ retina GCTGCCCGGC (5) 1.9 0.0019 P10.5 crx+ retina GGCCACATCA (6) 1.9 0.0019 Adult retinal GCTGCCAGGG (2) 29.6 0.0296 Adult retinal AAGGTGGAAG (5) 18.5 0.0185 Adult retinal ACACCCGACT (2) 3.7 0.0037 Adult retinal GCTGCCCAGG (10) 1.9 0.0019 Adult retinal GTGCAAACCT 1.9 0.0019 ONL AAGGTGGAAG (5) 49.8 0.0498 ONL GGGAAGCCCC (3) 34.5 0.0345 ONL GCTGCCAGGG (2) 7.7 0.0077 ONL TTGTAAAATA (5) 3.8 0.0038