Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.30071	Laptm4a	lysosomal-associated protein transmembrane 4A	12		17775
Gene Ontology	integral to membrane | transport
Human Homolog	LAPTM4A[lysosomal-associated protein transmembrane 4 alpha]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 144 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC CTTCTCATTT (2) 37.5 0.0375 P8 Cb GC CAACCATCAT 11.4 0.0114 P8 Cb GC TTTTCTTTTT (10) 8.2 0.0082 P8 Cb GC TCCTTAAAAA (5) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma CTTCTCATTT (2) 30.1 0.0301 Cb medulloblastoma CAACCATCAT 6.9 0.0069 Cb medulloblastoma CTGTTAGTCG (4) 2.3 0.0023 Cb medulloblastoma GCTTCTCATT (5) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture CTTCTCATTT (2) 38.8 0.0388 P8 GC+1d culture CAACCATCAT 14.8 0.0148 P8 GC+1d culture TATTAATAAG (2) 8 0.008 P8 GC+1d culture TTTTCTTTTT (10) 8 0.008 P8 GC+1d culture GAGACCCCTC (4) 5.7 0.0057 P8 GC+1d culture CCAGCTGTCA (2) 2.3 0.0023 P8 GC+1d culture CCAGCTGTCT (2) 2.3 0.0023 P8 GC+1d culture TCCTTAAAAA (5) 2.3 0.0023 P8 GC+1d culture GCTTCTCATT (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture CTTCTCATTT (2) 29.3 0.0293 P8 GC+SHH+1d culture CAACCATCAT 8.2 0.0082 P8 GC+SHH+1d culture TTTTCTTTTT (10) 4.7 0.0047 P8 GC+SHH+1d culture GAGACCCCTC (4) 2.3 0.0023 P8 GC+SHH+1d culture AACACCATCC (2) 1.2 0.0012 P8 GC+SHH+1d culture CCAGCTGTCA (2) 1.2 0.0012 P8 GC+SHH+1d culture CCAGCTGTCT (2) 1.2 0.0012 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 3T3 fibroblasts CTTCTCATTT (2) 28 0.028 3T3 fibroblasts CCAGCTGTCA (2) 10.5 0.0105 3T3 fibroblasts GCTTCTCATT (5) 7 0.007 3T3 fibroblasts TTTTCTTTTT (10) 7 0.007 3T3 fibroblasts CAACCATCAT 3.5 0.0035 3T3 fibroblasts GAGACCCCTC (4) 3.5 0.0035 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 E15 cortex CTTCTCATTT (2) 14.8 0.0148 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex CTTCTCATTT (2) 18.2 0.0182 P1 cortex CAACCATCAT 9.1 0.0091 P1 cortex GAGACCCCTC (4) 4.5 0.0045 P1 cortex TCCTTAAAAA (5) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus CTTCTCATTT (2) 18.1 0.0181 Hypothalamus CAACCATCAT 5.4 0.0054 Hypothalamus TTTTCTTTTT (10) 5.4 0.0054 Hypothalamus GAGACCCCTC (4) 3.6 0.0036 Hypothalamus CCAGCTGTCT (2) 1.8 0.0018 Hypothalamus GCTTCTCATT (5) 1.8 0.0018 Hypothalamus TATTAATAAG (2) 1.8 0.0018 Hypothalamus TTTTTCATTT 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina CTTCTCATTT (2) 22.5 0.0225 E12.5 retina CAACCATCAT 5.6 0.0056 E12.5 retina CCAGCTGTCT (2) 3.8 0.0038 E12.5 retina TATTAATAAG (2) 3.8 0.0038 E12.5 retina AACACCATCC (2) 1.9 0.0019 E12.5 retina CCAGCTGTCA (2) 1.9 0.0019 E12.5 retina TCCTTAAAAA (5) 1.9 0.0019 E12.5 retina TTTTCTTTTT (10) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina CTTCTCATTT (2) 23.7 0.0237 E14.5 retina CAGCTTGTCA (6) 5.5 0.0055 E14.5 retina CTGTTAGTCG (4) 5.5 0.0055 E14.5 retina CAACCATCAT 3.6 0.0036 E14.5 retina GCTTCTCATT (5) 3.6 0.0036 E14.5 retina TATTAATAAG (2) 3.6 0.0036 E14.5 retina GAGACCCCTC (4) 1.8 0.0018 E14.5 retina TTTTCTTTTT (10) 1.8 0.0018 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CTTCTCATTT (2) 18.1 0.0181 E16.5 retina CAACCATCAT 3.6 0.0036 E16.5 retina CAGCTTGTCA (6) 3.6 0.0036 E16.5 retina TTTTCTTTTT (10) 3.6 0.0036 E16.5 retina AACACCATCC (2) 1.8 0.0018 E16.5 retina CTGTTAGTCG (4) 1.8 0.0018 E16.5 retina CTTTTCATTT (4) 1.8 0.0018 E16.5 retina GAGACCCCTC (4) 1.8 0.0018 E16.5 retina GCTTCTCATT (5) 1.8 0.0018 E16.5 retina GTGGTCACAA (7) 1.8 0.0018 E16.5 retina TATTAATAAG (2) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina CTTCTCATTT (2) 27.3 0.0273 E18.5 retina CAACCATCAT 10.9 0.0109 E18.5 retina TTTTCTTTTT (10) 7.3 0.0073 E18.5 retina GAGACCCCTC (4) 3.6 0.0036 E18.5 retina CAATGGACAG (2) 1.8 0.0018 E18.5 retina TATTAATAAG (2) 1.8 0.0018 E18.5 retina TCCTTAAAAA (5) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina CTTCTCATTT (2) 15.7 0.0157 P0.5 retina CAACCATCAT 7.9 0.0079 P0.5 retina CTGTTAGTCG (4) 3.9 0.0039 P0.5 retina TCCTTAAAAA (5) 3.9 0.0039 P0.5 retina CCAGCTGTCT (2) 2 0.002 P0.5 retina GAGACCCCTC (4) 2 0.002 P0.5 retina GTGGTCACAA (7) 2 0.002 P0.5 retina TATTAATAAG (2) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina CTTCTCATTT (2) 24.6 0.0246 P2.5 retina CAACCATCAT 12.3 0.0123 P2.5 retina CTGGTTTATG (2) 1.8 0.0018 P2.5 retina TATTAATAAG (2) 1.8 0.0018 P2.5 retina TCCTTAAAAA (5) 1.8 0.0018 P2.5 retina TTTTCTTTTT (10) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina CTTCTCATTT (2) 29.7 0.0297 P4.5 retina CAACCATCAT 7.9 0.0079 P4.5 retina GAGACCCCTC (4) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina CTTCTCATTT (2) 33.3 0.0333 P6.5 retina CAACCATCAT 11.7 0.0117 P6.5 retina TATTAATAAG (2) 5 0.005 P6.5 retina AACACCATCC (2) 3.3 0.0033 P6.5 retina CAATGGACAG (2) 3.3 0.0033 P6.5 retina CCAGCTGTCA (2) 1.7 0.0017 P6.5 retina CTGGTTTATG (2) 1.7 0.0017 P6.5 retina CTTTTCATTT (4) 1.7 0.0017 P6.5 retina TCCTTAAAAA (5) 1.7 0.0017 P6.5 retina TTTTCTTTTT (10) 1.7 0.0017 P6.5 retina TTTTTCATTT 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CTTCTCATTT (2) 24.2 0.0242 P10.5 crx- retina CAACCATCAT 3.7 0.0037 P10.5 crx- retina TATTAATAAG (2) 3.7 0.0037 P10.5 crx- retina CTTTTCATTT (4) 1.9 0.0019 P10.5 crx- retina GTGGTCACAA (7) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina CTTCTCATTT (2) 17.3 0.0173 P10.5 crx+ retina CTGTTAGTCG (4) 7.7 0.0077 P10.5 crx+ retina CAACCATCAT 5.8 0.0058 P10.5 crx+ retina TTTTCTTTTT (10) 3.8 0.0038 P10.5 crx+ retina CCAGCTGTCA (2) 1.9 0.0019 P10.5 crx+ retina CTTTTCATTT (4) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal CTTCTCATTT (2) 14.8 0.0148 Adult retinal CAACCATCAT 1.9 0.0019 Adult retinal GAGACCCCTC (4) 1.9 0.0019 Adult retinal GTGGTCACAA (7) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL CTGTTAGTCG (4) 5.7 0.0057 ONL CTTCTCATTT (2) 3.8 0.0038 ONL TTTTCTTTTT (10) 3.8 0.0038 ONL CTGGTTTATG (2) 1.9 0.0019