Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.302083	3830408D07Rik	RIKEN cDNA 3830408D07 gene	8		70685
Mm.302083	1110035E04Rik	RIKEN cDNA 1110035E04 gene	8		68672
Mm.302083	Nfat5	nuclear factor of activated T-cells 5	8	8 53.0 cM	54446
Mm.302083	C430050I21Rik	RIKEN cDNA C430050I21 gene	8		77602
Mm.302083	B130038B15Rik	RIKEN cDNA B130038B15 gene	8		319771
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 89 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AGACCCTGTC (35) 6.5 0.0065 P8 Cb GC AAACCCTGTC (15) 3.3 0.0033 P8 Cb GC ATTTATTAAA (8) 1.6 0.0016 P8 Cb GC GTGCAGTGGT (6) 1.6 0.0016 P8 Cb GC TGGTTACTGG (10) 1.6 0.0016 P8 Cb GC TTCTGATAAT (7) 1.6 0.0016 Cb medulloblastoma AGACCCTGTC (35) 20.8 0.0208 Cb medulloblastoma CGCAAGGCCC (6) 2.3 0.0023 Cb medulloblastoma CTAAGCCTCA (6) 2.3 0.0023 P8 GC+1d culture AGACCCTGTC (35) 4.6 0.0046 P8 GC+1d culture AAACCCTGTC (15) 3.4 0.0034 P8 GC+1d culture ATTTATTAAA (8) 2.3 0.0023 P8 GC+1d culture TTCTCAAGTG (5) 2.3 0.0023 P8 GC+SHH+1d culture TGGTTACTGG (10) 2.3 0.0023 P8 GC+SHH+1d culture AAACCCTGTC (15) 1.2 0.0012 P8 GC+SHH+1d culture AGACCCTGTC (35) 1.2 0.0012 P8 GC+SHH+1d culture ATTTATTAAA (8) 1.2 0.0012 P8 GC+SHH+1d culture CAGATGCAGT (6) 1.2 0.0012 P8 GC+SHH+1d culture CTGGCTTCCA (8) 1.2 0.0012 P8 GC+SHH+1d culture TTCTCAAGTG (5) 1.2 0.0012 3T3 fibroblasts CAGATGCAGT (6) 3.5 0.0035 E15 cortex AGACCCTGTC (35) 14.8 0.0148 E15 cortex TGGTTACTGG (10) 9.9 0.0099 E15 cortex TTCTCAAGTG (5) 4.9 0.0049 E15 cortex TTCTGATAAT (7) 4.9 0.0049 P1 cortex AAACCCTGTC (15) 4.5 0.0045 P1 cortex AGACCCTGTC (35) 4.5 0.0045 P1 cortex ATTTATTAAA (8) 4.5 0.0045 Hypothalamus TTGTGCTTTG (6) 5.4 0.0054 Hypothalamus ATTTATTAAA (8) 3.6 0.0036 Hypothalamus AGACCCTGTC (35) 1.8 0.0018 Hypothalamus TGGTTACTGG (10) 1.8 0.0018 E12.5 retina AGACCCTGTC (35) 5.6 0.0056 E12.5 retina CAGATGCAGT (6) 1.9 0.0019 E12.5 retina CGCAAGGCCC (6) 1.9 0.0019 E12.5 retina TGGTTACTGG (10) 1.9 0.0019 E14.5 retina TGGTTACTGG (10) 14.6 0.0146 E14.5 retina AGACCCTGTC (35) 5.5 0.0055 E14.5 retina AAACCCTGTC (15) 3.6 0.0036 E14.5 retina CGCAAGGCCC (6) 1.8 0.0018 E14.5 retina TTCTGATAAT (7) 1.8 0.0018 E16.5 retina TGGTTACTGG (10) 19.9 0.0199 E16.5 retina AGACCCTGTC (35) 3.6 0.0036 E16.5 retina AAACCCTGTC (15) 1.8 0.0018 E16.5 retina ATTTATTAAA (8) 1.8 0.0018 E16.5 retina CTTTTAATGC (6) 1.8 0.0018 E16.5 retina GTGCAGTGGT (6) 1.8 0.0018 E16.5 retina TTCTCAAGTG (5) 1.8 0.0018 E18.5 retina AGACCCTGTC (35) 10.9 0.0109 E18.5 retina ATTTATTAAA (8) 3.6 0.0036 E18.5 retina AAACCCTGTC (15) 1.8 0.0018 E18.5 retina CGCAAGGCCC (6) 1.8 0.0018 E18.5 retina CTGGCTTCCA (8) 1.8 0.0018 E18.5 retina GTGCAGTGGT (6) 1.8 0.0018 E18.5 retina TGGTTACTGG (10) 1.8 0.0018 P0.5 retina AAACCCTGTC (15) 3.9 0.0039 P0.5 retina AGACCCTGTC (35) 2 0.002 P0.5 retina TGGTTACTGG (10) 2 0.002 P2.5 retina AGACCCTGTC (35) 12.3 0.0123 P2.5 retina AAACCCTGTC (15) 1.8 0.0018 P2.5 retina CTTTTAATGC (6) 1.8 0.0018 P2.5 retina TGGTTACTGG (10) 1.8 0.0018 P4.5 retina AGACCCTGTC (35) 7.9 0.0079 P4.5 retina TTCTGATAAT (7) 4 0.004 P4.5 retina CTAAGCCTCA (6) 2 0.002 P4.5 retina TTCTCAAGTG (5) 2 0.002 P6.5 retina AGACCCTGTC (35) 6.7 0.0067 P6.5 retina ATTTATTAAA (8) 1.7 0.0017 P6.5 retina TTCTCAAGTG (5) 1.7 0.0017 P10.5 crx- retina TGGTTACTGG (10) 3.7 0.0037 P10.5 crx- retina TTCTCAAGTG (5) 3.7 0.0037 P10.5 crx- retina AAACCCTGTC (15) 1.9 0.0019 P10.5 crx- retina AGACCCTGTC (35) 1.9 0.0019 P10.5 crx- retina CAGATGCAGT (6) 1.9 0.0019 P10.5 crx+ retina AGACCCTGTC (35) 11.5 0.0115 P10.5 crx+ retina AAACCCTGTC (15) 3.8 0.0038 P10.5 crx+ retina TTTTAAAAAG (9) 3.8 0.0038 P10.5 crx+ retina CTAAGCCTCA (6) 1.9 0.0019 P10.5 crx+ retina CTGGCTTCCA (8) 1.9 0.0019 P10.5 crx+ retina TGGTTACTGG (10) 1.9 0.0019 Adult retinal AGACCCTGTC (35) 13 0.013 Adult retinal AAACCCTGTC (15) 3.7 0.0037 Adult retinal CTTTTAATGC (6) 1.9 0.0019 Adult retinal TTCTGATAAT (7) 1.9 0.0019 ONL AGACCCTGTC (35) 17.2 0.0172 ONL TGGTTACTGG (10) 7.7 0.0077 ONL CGCAAGGCCC (6) 3.8 0.0038 ONL ATTTATTAAA (8) 1.9 0.0019 ONL TTTTAAAAAG (9) 1.9 0.0019