Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.319512	Hip2	huntingtin interacting protein 2	5	5 C3.1 (5 39.0 cM)	53323
Gene Ontology	cellular_component unknown | ligase activity | protein modification | ubiquitin conjugating enzyme activity | ubiquitin cycle | ubiquitin-dependent protein catabolism | ubiquitin-protein ligase activity
Human Homolog	HIP2[huntingtin interacting protein 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

Total 4 In Situ Hybridization Images

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SAGE Tags

Total 132 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCTCATA (21) 22.8 0.0228 P8 Cb GC CTCCTAATCT (2) 9.8 0.0098 P8 Cb GC GTCAAAAAAA (15) 4.9 0.0049 P8 Cb GC GGATGTAGAG (2) 3.3 0.0033 P8 Cb GC CAGGGCAGGG (6) 1.6 0.0016 P8 Cb GC GCTGAAACTT (2) 1.6 0.0016 Cb medulloblastoma GTGGCTCATA (21) 23.1 0.0231 Cb medulloblastoma TATTAAAAAA (6) 9.2 0.0092 Cb medulloblastoma GTCAAAAAAA (15) 6.9 0.0069 Cb medulloblastoma CTCCTAATCT (2) 2.3 0.0023 Cb medulloblastoma TCAGTGTTTG (2) 2.3 0.0023 P8 GC+1d culture GTGGCTCATA (21) 26.3 0.0263 P8 GC+1d culture CTCCTAATCT (2) 12.6 0.0126 P8 GC+1d culture GTCAAAAAAA (15) 12.6 0.0126 P8 GC+1d culture GGATGTAGAG (2) 4.6 0.0046 P8 GC+1d culture CACATTCCCC 3.4 0.0034 P8 GC+1d culture CAGGGCAGGG (6) 2.3 0.0023 P8 GC+1d culture GCTGAAACTT (2) 2.3 0.0023 P8 GC+1d culture GTCAATTTAT 1.1 0.0011 P8 GC+1d culture TATTAAAAAA (6) 1.1 0.0011 P8 GC+1d culture TTCTTGGAGT (5) 1.1 0.0011 P8 GC+SHH+1d culture GTGGCTCATA (21) 24.6 0.0246 P8 GC+SHH+1d culture GTCAAAAAAA (15) 15.2 0.0152 P8 GC+SHH+1d culture CTCCTAATCT (2) 11.7 0.0117 P8 GC+SHH+1d culture CAGGGCAGGG (6) 4.7 0.0047 P8 GC+SHH+1d culture GGATGTAGAG (2) 3.5 0.0035 P8 GC+SHH+1d culture CACATTCCCC 2.3 0.0023 P8 GC+SHH+1d culture GAGTTACAGC 2.3 0.0023 P8 GC+SHH+1d culture TATTAAAAAA (6) 2.3 0.0023 P8 GC+SHH+1d culture AAAGCTGTGC (4) 1.2 0.0012 3T3 fibroblasts GTGGCTCATA (21) 24.5 0.0245 3T3 fibroblasts GGATGTAGAG (2) 10.5 0.0105 3T3 fibroblasts CTCCTAATCT (2) 7 0.007 3T3 fibroblasts GAGTTACAGC 3.5 0.0035 E15 cortex GTGGCTCATA (21) 39.6 0.0396 E15 cortex GTCAAAAAAA (15) 24.7 0.0247 E15 cortex CTCCTAATCT (2) 19.8 0.0198 E15 cortex CAGGGCAGGG (6) 4.9 0.0049 P1 cortex CTCCTAATCT (2) 27.3 0.0273 P1 cortex GTGGCTCATA (21) 27.3 0.0273 P1 cortex GTCAAAAAAA (15) 22.7 0.0227 P1 cortex GGATGTAGAG (2) 9.1 0.0091 Hypothalamus GTGGCTCATA (21) 30.8 0.0308 Hypothalamus CTCCTAATCT (2) 10.9 0.0109 Hypothalamus GGATGTAGAG (2) 5.4 0.0054 Hypothalamus GTCAAAAAAA (15) 5.4 0.0054 Hypothalamus GAGTTACAGC 1.8 0.0018 Hypothalamus TCAGTGTTTG (2) 1.8 0.0018 Hypothalamus TTCTTGGAGT (5) 1.8 0.0018 E12.5 retina GTGGCTCATA (21) 82.6 0.0826 E12.5 retina CTCCTAATCT (2) 7.5 0.0075 E12.5 retina AAAGCTGTGC (4) 1.9 0.0019 E12.5 retina CAGGGCAGGG (6) 1.9 0.0019 E12.5 retina GTCAAAAAAA (15) 1.9 0.0019 E12.5 retina TATTAAAAAA (6) 1.9 0.0019 E12.5 retina TTTGCGGATG 1.9 0.0019 E14.5 retina GTGGCTCATA (21) 49.2 0.0492 E14.5 retina CTCCTAATCT (2) 10.9 0.0109 E14.5 retina GTCAAAAAAA (15) 10.9 0.0109 E14.5 retina CACATTCCCC 1.8 0.0018 E14.5 retina CAGGGCAGGG (6) 1.8 0.0018 E14.5 retina GGATGTAGAG (2) 1.8 0.0018 E14.5 retina GTCAATTTAT 1.8 0.0018 E14.5 retina TATTAAAAAA (6) 1.8 0.0018 E14.5 retina TTCTTGGAGT (5) 1.8 0.0018 E16.5 retina GTGGCTCATA (21) 34.4 0.0344 E16.5 retina CTCCTAATCT (2) 14.5 0.0145 E16.5 retina GTCAAAAAAA (15) 10.9 0.0109 E16.5 retina GGATGTAGAG (2) 5.4 0.0054 E16.5 retina CACATTCCCC 1.8 0.0018 E18.5 retina GTGGCTCATA (21) 47.3 0.0473 E18.5 retina GTCAAAAAAA (15) 30.9 0.0309 E18.5 retina CTCCTAATCT (2) 21.8 0.0218 E18.5 retina GGATGTAGAG (2) 3.6 0.0036 E18.5 retina TATTAAAAAA (6) 3.6 0.0036 E18.5 retina CACATTCCCC 1.8 0.0018 E18.5 retina TTTGCGGATG 1.8 0.0018 P0.5 retina GTGGCTCATA (21) 41.2 0.0412 P0.5 retina CTCCTAATCT (2) 27.5 0.0275 P0.5 retina GTCAAAAAAA (15) 7.9 0.0079 P0.5 retina GGATGTAGAG (2) 5.9 0.0059 P0.5 retina CAGGGCAGGG (6) 3.9 0.0039 P0.5 retina GAGTTACAGC 2 0.002 P0.5 retina GTCAATTTAT 2 0.002 P0.5 retina TATTAAAAAA (6) 2 0.002 P2.5 retina GTGGCTCATA (21) 49.3 0.0493 P2.5 retina CTCCTAATCT (2) 38.7 0.0387 P2.5 retina GTCAAAAAAA (15) 10.6 0.0106 P2.5 retina GGATGTAGAG (2) 7 0.007 P2.5 retina CACATTCCCC 3.5 0.0035 P2.5 retina CAGGGCAGGG (6) 3.5 0.0035 P2.5 retina GTCAATTTAT 3.5 0.0035 P4.5 retina GTGGCTCATA (21) 53.5 0.0535 P4.5 retina CTCCTAATCT (2) 31.7 0.0317 P4.5 retina GGATGTAGAG (2) 5.9 0.0059 P4.5 retina CAGGGCAGGG (6) 4 0.004 P4.5 retina CACATTCCCC 2 0.002 P4.5 retina GAGTTACAGC 2 0.002 P4.5 retina GTCAAAAAAA (15) 2 0.002 P4.5 retina TATTAAAAAA (6) 2 0.002 P6.5 retina GTGGCTCATA (21) 33.3 0.0333 P6.5 retina CTCCTAATCT (2) 25 0.025 P6.5 retina GTCAAAAAAA (15) 10 0.01 P6.5 retina CAGGGCAGGG (6) 3.3 0.0033 P6.5 retina AAAGCTGTGC (4) 1.7 0.0017 P6.5 retina GAGTTACAGC 1.7 0.0017 P6.5 retina GGATGTAGAG (2) 1.7 0.0017 P6.5 retina TTTGCGGATG 1.7 0.0017 P10.5 crx- retina GTGGCTCATA (21) 33.4 0.0334 P10.5 crx- retina CTCCTAATCT (2) 14.9 0.0149 P10.5 crx- retina GTCAAAAAAA (15) 3.7 0.0037 P10.5 crx- retina CACATTCCCC 1.9 0.0019 P10.5 crx- retina GAGTTACAGC 1.9 0.0019 P10.5 crx- retina GGATGTAGAG (2) 1.9 0.0019 P10.5 crx- retina TCAGTGTTTG (2) 1.9 0.0019 P10.5 crx+ retina GTGGCTCATA (21) 38.4 0.0384 P10.5 crx+ retina CAGGGCAGGG (6) 5.8 0.0058 P10.5 crx+ retina CTCCTAATCT (2) 5.8 0.0058 P10.5 crx+ retina GTCAAAAAAA (15) 5.8 0.0058 P10.5 crx+ retina GGATGTAGAG (2) 3.8 0.0038 P10.5 crx+ retina GAGTTACAGC 1.9 0.0019 Adult retinal CTCCTAATCT (2) 25.9 0.0259 Adult retinal GTGGCTCATA (21) 24.1 0.0241 Adult retinal GTCAAAAAAA (15) 7.4 0.0074 Adult retinal CAGGGCAGGG (6) 5.6 0.0056 ONL GTGGCTCATA (21) 49.8 0.0498 ONL CTCCTAATCT (2) 15.3 0.0153 ONL CAGGGCAGGG (6) 3.8 0.0038 ONL TATTAAAAAA (6) 3.8 0.0038 ONL AAAGCTGTGC (4) 1.9 0.0019 ONL GCTGAAACTT (2) 1.9 0.0019 ONL GTCAAAAAAA (15) 1.9 0.0019