Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.319719	Rpl13	ribosomal protein L13	8		270106
Gene Ontology	cytosolic ribosome (sensu Eukarya) | intracellular | protein biosynthesis | ribosome | ribosome biogenesis | structural constituent of ribosome
Human Homolog	RPL13[ribosomal protein L13]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 151 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC ATACTGAAGC (2) 42.4 0.0424 P8 Cb GC GCCCGTGCCA (3) 6.5 0.0065 P8 Cb GC TTCAACACTT (2) 6.5 0.0065 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC GCGCCCAGCC (2) 3.3 0.0033 P8 Cb GC TGACACTTTA (8) 1.6 0.0016 P8 Cb GC TGTACAAAAA 1.6 0.0016 Cb medulloblastoma ATACTGAAGC (2) 16.2 0.0162 Cb medulloblastoma GCCCGTGCCA (3) 9.2 0.0092 Cb medulloblastoma TGACACTTTA (8) 6.9 0.0069 Cb medulloblastoma CGCAAGGCCC (6) 2.3 0.0023 Cb medulloblastoma TTCAACACTT (2) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture ATACTGAAGC (2) 40 0.04 P8 GC+1d culture TTCAACACTT (2) 22.8 0.0228 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture AGCTCAGGGT (2) 3.4 0.0034 P8 GC+1d culture GCCCGTGCCA (3) 2.3 0.0023 P8 GC+1d culture TGACACTTTA (8) 1.1 0.0011 P8 GC+SHH+1d culture ATACTGAAGC (2) 39.8 0.0398 P8 GC+SHH+1d culture GCCCGTGCCA (3) 15.2 0.0152 P8 GC+SHH+1d culture TTCAACACTT (2) 12.9 0.0129 P8 GC+SHH+1d culture TGACACTTTA (8) 7 0.007 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture AGCTCAGGGT (2) 2.3 0.0023 P8 GC+SHH+1d culture TTAAGTTCTT (3) 2.3 0.0023 P8 GC+SHH+1d culture GCGCCCAGCC (2) 1.2 0.0012 P8 GC+SHH+1d culture TGTACAAAAA 1.2 0.0012 3T3 fibroblasts ATACTGAAGC (2) 98.1 0.0981 3T3 fibroblasts GCCCGTGCCA (3) 21 0.021 3T3 fibroblasts AGCTCAGGGT (2) 7 0.007 3T3 fibroblasts TTCAACACTT (2) 7 0.007 3T3 fibroblasts CACACACATC (12) 3.5 0.0035 E15 cortex ATACTGAAGC (2) 19.8 0.0198 E15 cortex AGCTCAGGGT (2) 9.9 0.0099 E15 cortex GCCCGTGCCA (3) 9.9 0.0099 E15 cortex GCGCCCAGCC (2) 4.9 0.0049 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex ATACTGAAGC (2) 68.2 0.0682 P1 cortex TTCAACACTT (2) 9.1 0.0091 P1 cortex TGTACAAAAA 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus ATACTGAAGC (2) 9.1 0.0091 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TTCAACACTT (2) 5.4 0.0054 Hypothalamus AGCTCAGGGT (2) 1.8 0.0018 Hypothalamus GCCCGTGCCA (3) 1.8 0.0018 Hypothalamus TGACACTTTA (8) 1.8 0.0018 E12.5 retina ATACTGAAGC (2) 46.9 0.0469 E12.5 retina TTCAACACTT (2) 11.3 0.0113 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina GCCCGTGCCA (3) 5.6 0.0056 E12.5 retina TGACACTTTA (8) 3.8 0.0038 E12.5 retina TTTCTAAAAG (2) 3.8 0.0038 E12.5 retina CGCAAGGCCC (6) 1.9 0.0019 E12.5 retina GGGGATCAGT (9) 1.9 0.0019 E12.5 retina TGCACAAGCA (2) 1.9 0.0019 E12.5 retina TTAAGTTCTT (3) 1.9 0.0019 E14.5 retina ATACTGAAGC (2) 51 0.051 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina TTCAACACTT (2) 9.1 0.0091 E14.5 retina GCCCGTGCCA (3) 7.3 0.0073 E14.5 retina TGACACTTTA (8) 3.6 0.0036 E14.5 retina AGCTCAGGGT (2) 1.8 0.0018 E14.5 retina CGCAAGGCCC (6) 1.8 0.0018 E14.5 retina TGTACAAAAA 1.8 0.0018 E14.5 retina TTTCTAAAAG (2) 1.8 0.0018 E16.5 retina ATACTGAAGC (2) 54.3 0.0543 E16.5 retina TTCAACACTT (2) 12.7 0.0127 E16.5 retina GCCCGTGCCA (3) 7.2 0.0072 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina AGCTCAGGGT (2) 1.8 0.0018 E16.5 retina GCGCCCAGCC (2) 1.8 0.0018 E16.5 retina TGCACAAGCA (2) 1.8 0.0018 E18.5 retina ATACTGAAGC (2) 21.8 0.0218 E18.5 retina TTCAACACTT (2) 16.4 0.0164 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina GCCCGTGCCA (3) 9.1 0.0091 E18.5 retina TGACACTTTA (8) 3.6 0.0036 E18.5 retina AGCTCAGGGT (2) 1.8 0.0018 E18.5 retina CGCAAGGCCC (6) 1.8 0.0018 E18.5 retina TGTACAAAAA 1.8 0.0018 E18.5 retina TTTCTAAAAG (2) 1.8 0.0018 P0.5 retina ATACTGAAGC (2) 115.8 0.1158 P0.5 retina GCCCGTGCCA (3) 9.8 0.0098 P0.5 retina TGCACAAGCA (2) 9.8 0.0098 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TTCAACACTT (2) 3.9 0.0039 P0.5 retina AGCTCAGGGT (2) 2 0.002 P0.5 retina TGACACTTTA (8) 2 0.002 P0.5 retina TTTCTAAAAG (2) 2 0.002 P2.5 retina ATACTGAAGC (2) 40.5 0.0405 P2.5 retina GCCCGTGCCA (3) 12.3 0.0123 P2.5 retina TTCAACACTT (2) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina TGACACTTTA (8) 5.3 0.0053 P2.5 retina AGCTCAGGGT (2) 3.5 0.0035 P2.5 retina ATAATCAAAC (2) 1.8 0.0018 P2.5 retina TTAAGTTCTT (3) 1.8 0.0018 P4.5 retina ATACTGAAGC (2) 17.8 0.0178 P4.5 retina GCCCGTGCCA (3) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina TGACACTTTA (8) 5.9 0.0059 P4.5 retina TTCAACACTT (2) 5.9 0.0059 P4.5 retina TGCACAAGCA (2) 2 0.002 P4.5 retina TTTCTAAAAG (2) 2 0.002 P6.5 retina ATACTGAAGC (2) 16.7 0.0167 P6.5 retina TGACACTTTA (8) 10 0.01 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina GCCCGTGCCA (3) 5 0.005 P6.5 retina AGCTCAGGGT (2) 3.3 0.0033 P6.5 retina ATAATCAAAC (2) 1.7 0.0017 P6.5 retina CCGACTCTTT (4) 1.7 0.0017 P6.5 retina TTCAACACTT (2) 1.7 0.0017 P10.5 crx- retina ATACTGAAGC (2) 57.6 0.0576 P10.5 crx- retina ATGTTGAAAA 5.6 0.0056 P10.5 crx- retina CCGACTCTTT (4) 3.7 0.0037 P10.5 crx- retina TTCAACACTT (2) 3.7 0.0037 P10.5 crx- retina AGCTCAGGGT (2) 1.9 0.0019 P10.5 crx- retina GGGGATCAGT (9) 1.9 0.0019 P10.5 crx+ retina ATACTGAAGC (2) 11.5 0.0115 P10.5 crx+ retina GCCCGTGCCA (3) 11.5 0.0115 P10.5 crx+ retina CCGACTCTTT (4) 5.8 0.0058 P10.5 crx+ retina TTCAACACTT (2) 5.8 0.0058 P10.5 crx+ retina GCACCCAGCT (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina AGCTCAGGGT (2) 1.9 0.0019 P10.5 crx+ retina ATAATCAAAC (2) 1.9 0.0019 P10.5 crx+ retina ATGTTGAAAA 1.9 0.0019 P10.5 crx+ retina CACACACATC (12) 1.9 0.0019 P10.5 crx+ retina GGGGATCAGT (9) 1.9 0.0019 P10.5 crx+ retina TGACACTTTA (8) 1.9 0.0019 Adult retinal ATACTGAAGC (2) 29.6 0.0296 Adult retinal GCCCGTGCCA (3) 16.7 0.0167 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal AGCTCAGGGT (2) 3.7 0.0037 Adult retinal ATGTTGAAAA 3.7 0.0037 Adult retinal TGCACAAGCA (2) 3.7 0.0037 Adult retinal ATAATCAAAC (2) 1.9 0.0019 Adult retinal CCGACTCTTT (4) 1.9 0.0019 Adult retinal TGACACTTTA (8) 1.9 0.0019 Adult retinal TTCAACACTT (2) 1.9 0.0019 ONL ATACTGAAGC (2) 5.7 0.0057 ONL ATGTTGAAAA 5.7 0.0057 ONL CGCAAGGCCC (6) 3.8 0.0038 ONL TGACACTTTA (8) 3.8 0.0038 ONL TGCACAAGCA (2) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL CACACACATC (12) 1.9 0.0019 ONL TTCAACACTT (2) 1.9 0.0019 ONL TTTCTAAAAG (2) 1.9 0.0019