Mouse Retina SAGE Library

[Home]    [Libraries]    [Images]

---

Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

---

UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.333868	Rap1a	RAS-related protein-1a	3	3 48.5 cM	109905
Gene Ontology	GTP binding | GTPase activity | membrane | negative regulation of cell cycle | small GTPase mediated signal transduction
Human Homolog	RAP1A[RAP1A, member of RAS oncogene family]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 65 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC AAAAAAAAAA (658) 203.9 0.2039 P8 Cb GC AGTCAAAAAA (7) 1.6 0.0016 P8 Cb GC CCTTGCTGAG (4) 1.6 0.0016 P8 Cb GC GAGACAAAGG (9) 1.6 0.0016 Cb medulloblastoma AAAAAAAAAA (658) 797.8 0.7978 Cb medulloblastoma AGTCAAAAAA (7) 16.2 0.0162 Cb medulloblastoma CCTTGCTGAG (4) 2.3 0.0023 P8 GC+1d culture AAAAAAAAAA (658) 204.3 0.2043 P8 GC+1d culture AGTCAAAAAA (7) 3.4 0.0034 P8 GC+1d culture CCTTGCTGAG (4) 2.3 0.0023 P8 GC+1d culture ACAGATATAA (5) 1.1 0.0011 P8 GC+1d culture ACTCCTCCCT (5) 1.1 0.0011 P8 GC+SHH+1d culture AAAAAAAAAA (658) 278.7 0.2787 P8 GC+SHH+1d culture AGTCAAAAAA (7) 8.2 0.0082 P8 GC+SHH+1d culture ACTCCTCCCT (5) 3.5 0.0035 P8 GC+SHH+1d culture GAGACAAAGG (9) 2.3 0.0023 3T3 fibroblasts AAAAAAAAAA (658) 28 0.028 E15 cortex AAAAAAAAAA (658) 212.8 0.2128 P1 cortex AAAAAAAAAA (658) 245.4 0.2454 P1 cortex AGTCAAAAAA (7) 4.5 0.0045 Hypothalamus AAAAAAAAAA (658) 123.2 0.1232 Hypothalamus AGTCAAAAAA (7) 7.2 0.0072 Hypothalamus ACAGATATAA (5) 3.6 0.0036 Hypothalamus ACTCCTCCCT (5) 1.8 0.0018 Hypothalamus GAGACAAAGG (9) 1.8 0.0018 E12.5 retina AAAAAAAAAA (658) 138.9 0.1389 E12.5 retina AGTCAAAAAA (7) 1.9 0.0019 E14.5 retina AAAAAAAAAA (658) 94.7 0.0947 E14.5 retina AGTCAAAAAA (7) 10.9 0.0109 E16.5 retina AAAAAAAAAA (658) 43.5 0.0435 E16.5 retina CCTTGCTGAG (4) 5.4 0.0054 E16.5 retina AGTCAAAAAA (7) 1.8 0.0018 E18.5 retina AAAAAAAAAA (658) 374.7 0.3747 E18.5 retina AGTCAAAAAA (7) 10.9 0.0109 E18.5 retina ACTCCTCCCT (5) 1.8 0.0018 P0.5 retina AAAAAAAAAA (658) 117.8 0.1178 P0.5 retina ACTCCTCCCT (5) 3.9 0.0039 P0.5 retina ACAGATATAA (5) 2 0.002 P0.5 retina AGTCAAAAAA (7) 2 0.002 P2.5 retina AAAAAAAAAA (658) 329.1 0.3291 P2.5 retina AGTCAAAAAA (7) 8.8 0.0088 P2.5 retina GAGACAAAGG (9) 1.8 0.0018 P4.5 retina AAAAAAAAAA (658) 283.3 0.2833 P4.5 retina AGTCAAAAAA (7) 2 0.002 P6.5 retina AAAAAAAAAA (658) 266.8 0.2668 P6.5 retina AGTCAAAAAA (7) 10 0.01 P6.5 retina ACTCCTCCCT (5) 5 0.005 P6.5 retina CCTTGCTGAG (4) 1.7 0.0017 P6.5 retina GAGACAAAGG (9) 1.7 0.0017 P10.5 crx- retina AAAAAAAAAA (658) 44.6 0.0446 P10.5 crx- retina CCTTGCTGAG (4) 5.6 0.0056 P10.5 crx- retina ACTCCTCCCT (5) 3.7 0.0037 P10.5 crx- retina AGTCAAAAAA (7) 1.9 0.0019 P10.5 crx+ retina AAAAAAAAAA (658) 96.1 0.0961 P10.5 crx+ retina AGTCAAAAAA (7) 5.8 0.0058 P10.5 crx+ retina ACAGATATAA (5) 1.9 0.0019 P10.5 crx+ retina ACTCCTCCCT (5) 1.9 0.0019 Adult retinal AAAAAAAAAA (658) 57.4 0.0574 Adult retinal AGTCAAAAAA (7) 9.3 0.0093 Adult retinal ACTCCTCCCT (5) 3.7 0.0037 Adult retinal GAGACAAAGG (9) 1.9 0.0019 ONL AAAAAAAAAA (658) 103.4 0.1034 ONL AGTCAAAAAA (7) 3.8 0.0038 ONL ACTCCTCCCT (5) 1.9 0.0019 ONL GAGACAAAGG (9) 1.9 0.0019