Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.334658	Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	8	8 38.5 cM	12286
Gene Ontology	calcium channel activity | calcium ion binding | calcium ion transport | cation channel activity | cation transport | integral to membrane | ion channel activity | ion transport | membrane | protein binding | transport | voltage-gated calcium channel activity | voltage-gated calcium channel complex | voltage-gated ion channel activity
Human Homolog	CACNA1A[calcium channel, voltage-dependent, P/Q type, alpha 1A subunit]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 29 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GTGGCACACA (30) 6.5 0.0065 Cb medulloblastoma GTGGCACACA (30) 11.6 0.0116 Cb medulloblastoma CGCCTGAGGG 2.3 0.0023 P8 GC+1d culture GTGGCACACA (30) 13.7 0.0137 P8 GC+1d culture AAGTCCATCA (4) 1.1 0.0011 P8 GC+SHH+1d culture GTGGCACACA (30) 2.3 0.0023 P8 GC+SHH+1d culture AAGTCCATCA (4) 1.2 0.0012 P8 GC+SHH+1d culture CGCCTGAGGG 1.2 0.0012 3T3 fibroblasts GTGGCACACA (30) 14 0.014 E15 cortex GTGGCACACA (30) 24.7 0.0247 P1 cortex GTGGCACACA (30) 4.5 0.0045 Hypothalamus GTGGCACACA (30) 7.2 0.0072 Hypothalamus AAGTCCATCA (4) 5.4 0.0054 Hypothalamus CGCCTGAGGG 1.8 0.0018 E12.5 retina GTGGCACACA (30) 11.3 0.0113 E14.5 retina GTGGCACACA (30) 18.2 0.0182 E16.5 retina GTGGCACACA (30) 9.1 0.0091 E16.5 retina AAGTCCATCA (4) 1.8 0.0018 E18.5 retina GTGGCACACA (30) 5.5 0.0055 P0.5 retina GTGGCACACA (30) 11.8 0.0118 P2.5 retina GTGGCACACA (30) 17.6 0.0176 P4.5 retina GTGGCACACA (30) 11.9 0.0119 P6.5 retina GTGGCACACA (30) 26.7 0.0267 P10.5 crx- retina GTGGCACACA (30) 13 0.013 P10.5 crx- retina CGCCTGAGGG 1.9 0.0019 P10.5 crx+ retina GTGGCACACA (30) 7.7 0.0077 Adult retinal GTGGCACACA (30) 5.6 0.0056 Adult retinal CGCCTGAGGG 1.9 0.0019 ONL GTGGCACACA (30) 24.9 0.0249