Mouse Retina SAGE Library
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Gene:
Accession:
e.g., Rho or Rhodopsin
e.g., BG297543
batch search
Tag:
Cytoband (Mm):
e.g., CCCAGTTCAC
e.g., 6 E3
Unigene:
Cytoband (Hs):
e.g., Mm.2965
batch search
e.g., 3q21-q24
UniGene
Symbol
Name
Chr
Cytoband
LocusLink
Mm.34108
Rragd
Ras-related GTP binding D
4
4 11.4 cM
52187
Mm.34108
C030003H22Rik
RIKEN cDNA C030003H22 gene
4
100146
Clusters
All Libraries - Raw Data
All Libraries - Normalized
Complete Retina - Raw Data
Complete Retina - Normalized
Early Retina - Raw Data
Early Retina - Normalized
Late Retina - Raw Data
Late Retina - Normalized
Neighbors
No In Situ Hybridization images could be found.
SAGE Tags
Total 87 tags found with positive counts.
all tags
reliable tags
sum by library with all tags
sum by library with reliable tags
Library
Tag (Other Genes)
Normalized Count
% in library
P8 Cb GC
CCTTTAATCC (
355
)
52.2
0.0522
P8 Cb GC
TGAATTTTTG (
4
)
13.1
0.0131
P8 Cb GC
TTTTTTTTCC
(
11
)
11.4
0.0114
P8 Cb GC
GTTCCTTCCT (
5
)
3.3
0.0033
P8 Cb GC
AGTTTTTGTT
(
2
)
1.6
0.0016
P8 Cb GC
TTTTTTTTTC (
16
)
1.6
0.0016
Cb medulloblastoma
CCTTTAATCC (
355
)
41.6
0.0416
Cb medulloblastoma
TGAATTTTTG (
4
)
4.6
0.0046
Cb medulloblastoma
TTTTTTTTCC
(
11
)
4.6
0.0046
Cb medulloblastoma
TTTTTTTTTC (
16
)
2.3
0.0023
P8 GC+1d culture
CCTTTAATCC (
355
)
32
0.032
P8 GC+1d culture
TGAATTTTTG (
4
)
9.1
0.0091
P8 GC+1d culture
TTTTTTTTCC
(
11
)
2.3
0.0023
P8 GC+1d culture
GATTTGATAA (
4
)
1.1
0.0011
P8 GC+1d culture
GTTCCTTCCT (
5
)
1.1
0.0011
P8 GC+SHH+1d culture
CCTTTAATCC (
355
)
25.8
0.0258
P8 GC+SHH+1d culture
TGAATTTTTG (
4
)
5.9
0.0059
P8 GC+SHH+1d culture
TTTTTTTTCC
(
11
)
5.9
0.0059
P8 GC+SHH+1d culture
TTTTTTTTTC (
16
)
2.3
0.0023
P8 GC+SHH+1d culture
TTTGTGTGCC
(
2
)
1.2
0.0012
3T3 fibroblasts
CCTTTAATCC (
355
)
70.1
0.0701
3T3 fibroblasts
TGAATTTTTG (
4
)
7
0.007
3T3 fibroblasts
TTTTTTTTCC
(
11
)
3.5
0.0035
E15 cortex
CCTTTAATCC (
355
)
54.4
0.0544
P1 cortex
CCTTTAATCC (
355
)
154.5
0.1545
P1 cortex
AAGTCTTCGA
(
2
)
4.5
0.0045
P1 cortex
GTTCCTTCCT (
5
)
4.5
0.0045
P1 cortex
TTTTTTTTTC (
16
)
4.5
0.0045
Hypothalamus
CCTTTAATCC (
355
)
19.9
0.0199
Hypothalamus
TTTTTTTTCC
(
11
)
12.7
0.0127
Hypothalamus
AGTTTTTGTT
(
2
)
9.1
0.0091
Hypothalamus
TTTGTGTGCC
(
2
)
5.4
0.0054
Hypothalamus
TTTTTTTTTC (
16
)
3.6
0.0036
Hypothalamus
GATTTGATAA (
4
)
1.8
0.0018
E12.5 retina
CCTTTAATCC (
355
)
75.1
0.0751
E12.5 retina
TTTTTTTTCC
(
11
)
1.9
0.0019
E12.5 retina
TTTTTTTTTC (
16
)
1.9
0.0019
E14.5 retina
CCTTTAATCC (
355
)
120.3
0.1203
E14.5 retina
TTTTTTTTCC
(
11
)
18.2
0.0182
E14.5 retina
AGTTTTTGTT
(
2
)
5.5
0.0055
E14.5 retina
TTTGTGTGCC
(
2
)
3.6
0.0036
E14.5 retina
TTTTTTTTTC (
16
)
3.6
0.0036
E16.5 retina
CCTTTAATCC (
355
)
68.8
0.0688
E16.5 retina
TTTTTTTTCC
(
11
)
36.2
0.0362
E16.5 retina
AGTTTTTGTT
(
2
)
10.9
0.0109
E16.5 retina
GTTCCTTCCT (
5
)
1.8
0.0018
E18.5 retina
CCTTTAATCC (
355
)
23.6
0.0236
E18.5 retina
TTTTTTTTCC
(
11
)
21.8
0.0218
E18.5 retina
AGTTTTTGTT
(
2
)
7.3
0.0073
E18.5 retina
TTTTTTTTTC (
16
)
5.5
0.0055
E18.5 retina
TGAATTTTTG (
4
)
1.8
0.0018
P0.5 retina
CCTTTAATCC (
355
)
72.6
0.0726
P0.5 retina
TTTTTTTTCC
(
11
)
3.9
0.0039
P0.5 retina
AGTTTTTGTT
(
2
)
2
0.002
P0.5 retina
GTTCCTTCCT (
5
)
2
0.002
P0.5 retina
TTTGTGTGCC
(
2
)
2
0.002
P2.5 retina
CCTTTAATCC (
355
)
70.4
0.0704
P2.5 retina
TTTTTTTTCC
(
11
)
5.3
0.0053
P2.5 retina
AGTTTTTGTT
(
2
)
3.5
0.0035
P2.5 retina
GTTCCTTCCT (
5
)
1.8
0.0018
P2.5 retina
TTTTTTTTTC (
16
)
1.8
0.0018
P4.5 retina
CCTTTAATCC (
355
)
43.6
0.0436
P4.5 retina
TTTTTTTTCC
(
11
)
9.9
0.0099
P4.5 retina
AGTTTTTGTT
(
2
)
5.9
0.0059
P4.5 retina
GTTCCTTCCT (
5
)
4
0.004
P4.5 retina
GATTTGATAA (
4
)
2
0.002
P4.5 retina
TTTTTTTTTC (
16
)
2
0.002
P6.5 retina
CCTTTAATCC (
355
)
70
0.07
P6.5 retina
TTTTTTTTCC
(
11
)
3.3
0.0033
P6.5 retina
TGAATTTTTG (
4
)
1.7
0.0017
P6.5 retina
TTTGTGTGCC
(
2
)
1.7
0.0017
P10.5 crx- retina
CCTTTAATCC (
355
)
63.2
0.0632
P10.5 crx- retina
AAGTCTTCGA
(
2
)
3.7
0.0037
P10.5 crx- retina
GTTCCTTCCT (
5
)
3.7
0.0037
P10.5 crx- retina
AGTTTTTGTT
(
2
)
1.9
0.0019
P10.5 crx- retina
TTTGTGTGCC
(
2
)
1.9
0.0019
P10.5 crx+ retina
CCTTTAATCC (
355
)
38.4
0.0384
P10.5 crx+ retina
TTTTTTTTCC
(
11
)
3.8
0.0038
P10.5 crx+ retina
AGTTTTTGTT
(
2
)
1.9
0.0019
P10.5 crx+ retina
GTTCCTTCCT (
5
)
1.9
0.0019
P10.5 crx+ retina
TTTGTGTGCC
(
2
)
1.9
0.0019
Adult retinal
CCTTTAATCC (
355
)
129.6
0.1296
Adult retinal
GTTCCTTCCT (
5
)
3.7
0.0037
Adult retinal
TTTTTTTTCC
(
11
)
1.9
0.0019
ONL
CCTTTAATCC (
355
)
84.3
0.0843
ONL
TTTGTGTGCC
(
2
)
1.9
0.0019
ONL
TTTTTTTTCC
(
11
)
1.9
0.0019
