Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.343333	9130219B18Rik	RIKEN cDNA 9130219B18 gene	13		78079
Mm.343333	AI481207	expressed sequence AI481207	13		105188
Mm.343333	4930562M23Rik	RIKEN cDNA 4930562M23 gene	13		75260
Mm.343333	9630011N22Rik	RIKEN cDNA 9630011N22 gene	13		320753
Mm.343333	B930063P07Rik	RIKEN cDNA B930063P07 gene	13		321002
Mm.343333	Pde4d	phosphodiesterase 4D, cAMP specific	13	13 52.0 cM	238871
Mm.343333	A630036H22Rik	RIKEN cDNA A630036H22 gene	13		320455
Mm.343333	C530030K21Rik	RIKEN cDNA C530030K21 gene	13		320583
Mm.343333	A730009E18Rik	RIKEN cDNA A730009E18 gene	13		319603
Mm.343333	9530083O12Rik	RIKEN cDNA 9530083O12 gene	13		319610
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 118 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GGGAAGGCGG (11) 213.7 0.2137 P8 Cb GC GTGCCGACCG (10) 11.4 0.0114 P8 Cb GC GGGAAGGGGG (23) 4.9 0.0049 P8 Cb GC GGGGAAGGGC (16) 4.9 0.0049 Cb medulloblastoma GGGAAGGCGG (11) 122.6 0.1226 Cb medulloblastoma GGGAAGGGGG (23) 13.9 0.0139 Cb medulloblastoma GGGAAAGCGG (14) 4.6 0.0046 Cb medulloblastoma GCTGGAGCTT (10) 2.3 0.0023 Cb medulloblastoma GTGCCGACCG (10) 2.3 0.0023 P8 GC+1d culture GGGAAGGCGG (11) 132.4 0.1324 P8 GC+1d culture GGGAAGGGGG (23) 4.6 0.0046 P8 GC+1d culture CTGCCCGCTC (12) 3.4 0.0034 P8 GC+1d culture GTGCCGACCG (10) 3.4 0.0034 P8 GC+1d culture GGGGAAGGGC (16) 2.3 0.0023 P8 GC+1d culture ACCCGAGAGG (14) 1.1 0.0011 P8 GC+1d culture GGGAAAGGCG (14) 1.1 0.0011 P8 GC+SHH+1d culture GGGAAGGCGG (11) 145.2 0.1452 P8 GC+SHH+1d culture GTGCCGACCG (10) 8.2 0.0082 P8 GC+SHH+1d culture GCGGTCGGCA (12) 3.5 0.0035 P8 GC+SHH+1d culture GGGAAGGGGG (23) 2.3 0.0023 P8 GC+SHH+1d culture CTGCCCGCTC (12) 1.2 0.0012 P8 GC+SHH+1d culture GAGAGGATAA (12) 1.2 0.0012 P8 GC+SHH+1d culture GCTGGAGCTT (10) 1.2 0.0012 P8 GC+SHH+1d culture GGGGAAGGGC (16) 1.2 0.0012 3T3 fibroblasts GGGAAGGCGG (11) 213.8 0.2138 3T3 fibroblasts GTGCCGACCG (10) 7 0.007 3T3 fibroblasts GGGAAAGGCG (14) 3.5 0.0035 3T3 fibroblasts GGGGAAGGGC (16) 3.5 0.0035 3T3 fibroblasts GTATGGATTT (13) 3.5 0.0035 E15 cortex GGGAAGGCGG (11) 197.9 0.1979 E15 cortex GGGAAGGGGG (23) 14.8 0.0148 E15 cortex GTGCCGACCG (10) 9.9 0.0099 E15 cortex GGGGAAGGCG (13) 4.9 0.0049 P1 cortex GGGAAGGCGG (11) 36.4 0.0364 P1 cortex GGGAAGGGGG (23) 9.1 0.0091 P1 cortex GGGAAAGCGG (14) 4.5 0.0045 Hypothalamus GGGAAGGCGG (11) 88.7 0.0887 Hypothalamus GCTGGAGCTT (10) 9.1 0.0091 Hypothalamus ACCCGAGAGG (14) 3.6 0.0036 Hypothalamus GGGAAGGGGG (23) 3.6 0.0036 Hypothalamus CTGCCCGCTC (12) 1.8 0.0018 Hypothalamus GAGAGGATAA (12) 1.8 0.0018 Hypothalamus GTATGGATTT (13) 1.8 0.0018 E12.5 retina GGGAAGGCGG (11) 210.3 0.2103 E12.5 retina GTGCCGACCG (10) 11.3 0.0113 E12.5 retina GGGGAAGGGC (16) 5.6 0.0056 E12.5 retina ACCCGAGAGG (14) 3.8 0.0038 E12.5 retina GAGAGGATAA (12) 1.9 0.0019 E12.5 retina GCGGTCGGCA (12) 1.9 0.0019 E12.5 retina GGGAAGGGGG (23) 1.9 0.0019 E14.5 retina GGGAAGGCGG (11) 149.4 0.1494 E14.5 retina GAGAGGATAA (12) 16.4 0.0164 E14.5 retina GCTGGAGCTT (10) 7.3 0.0073 E14.5 retina ATTTCCATCA (11) 5.5 0.0055 E14.5 retina GGGGAAGGGC (16) 5.5 0.0055 E14.5 retina ACCCGAGAGG (14) 1.8 0.0018 E14.5 retina GGGAAGGGGG (23) 1.8 0.0018 E14.5 retina GGGGAAGGCG (13) 1.8 0.0018 E14.5 retina TTCAATATTA (11) 1.8 0.0018 E16.5 retina GGGAAGGCGG (11) 260.8 0.2608 E16.5 retina TTCAATATTA (11) 10.9 0.0109 E16.5 retina ACCCGAGAGG (14) 5.4 0.0054 E16.5 retina GAGAGGATAA (12) 5.4 0.0054 E16.5 retina GGGGAAGGGC (16) 5.4 0.0054 E16.5 retina GCTGGAGCTT (10) 3.6 0.0036 E16.5 retina ATTTCCATCA (11) 1.8 0.0018 E16.5 retina GGGAAGGGGG (23) 1.8 0.0018 E16.5 retina GGGGAAGGCG (13) 1.8 0.0018 E18.5 retina GGGAAGGCGG (11) 141.9 0.1419 E18.5 retina GGGGAAGGGC (16) 5.5 0.0055 E18.5 retina GTGCCGACCG (10) 5.5 0.0055 E18.5 retina GAGAGGATAA (12) 3.6 0.0036 E18.5 retina GGGAAAGCGG (14) 1.8 0.0018 P0.5 retina GGGAAGGCGG (11) 210 0.21 P0.5 retina GGGGAAGGGC (16) 7.9 0.0079 P0.5 retina ACCCGAGAGG (14) 3.9 0.0039 P0.5 retina GGGAAAGCGG (14) 2 0.002 P0.5 retina GGGAAAGGCG (14) 2 0.002 P0.5 retina GGGAAGGGGG (23) 2 0.002 P0.5 retina GGGGAAGGCG (13) 2 0.002 P0.5 retina GTGCCGACCG (10) 2 0.002 P2.5 retina GGGAAGGCGG (11) 109.1 0.1091 P2.5 retina GGGGAAGGGC (16) 10.6 0.0106 P2.5 retina GGGAAGGGGG (23) 5.3 0.0053 P2.5 retina GTGCCGACCG (10) 5.3 0.0053 P2.5 retina GAGAGGATAA (12) 1.8 0.0018 P2.5 retina GGGAAAGGCG (14) 1.8 0.0018 P4.5 retina GGGAAGGCGG (11) 124.8 0.1248 P4.5 retina GGGAAGGGGG (23) 7.9 0.0079 P4.5 retina GAGAGGATAA (12) 4 0.004 P4.5 retina GGGGAAGGGC (16) 4 0.004 P4.5 retina GTGCCGACCG (10) 4 0.004 P6.5 retina GGGAAGGCGG (11) 56.7 0.0567 P6.5 retina GGGAAGGGGG (23) 15 0.015 P6.5 retina GGGGAAGGGC (16) 8.3 0.0083 P6.5 retina GAGAGGATAA (12) 1.7 0.0017 P6.5 retina GGGGAAGGCG (13) 1.7 0.0017 P10.5 crx- retina GGGAAGGCGG (11) 118.9 0.1189 P10.5 crx- retina GGGGAAGGGC (16) 13 0.013 P10.5 crx- retina GGGAAGGGGG (23) 11.1 0.0111 P10.5 crx- retina ATTTCCATCA (11) 1.9 0.0019 P10.5 crx- retina GGGAAAGCGG (14) 1.9 0.0019 P10.5 crx- retina GTGCCGACCG (10) 1.9 0.0019 P10.5 crx+ retina GGGAAGGCGG (11) 132.7 0.1327 P10.5 crx+ retina GGGGAAGGGC (16) 13.5 0.0135 P10.5 crx+ retina GGGAAGGGGG (23) 11.5 0.0115 P10.5 crx+ retina GCTGGAGCTT (10) 1.9 0.0019 P10.5 crx+ retina GTGCCGACCG (10) 1.9 0.0019 Adult retinal GGGAAGGCGG (11) 44.4 0.0444 Adult retinal GGGAAGGGGG (23) 11.1 0.0111 Adult retinal GGGGAAGGGC (16) 5.6 0.0056 Adult retinal GCTGGAGCTT (10) 1.9 0.0019 Adult retinal GGGAAAGGCG (14) 1.9 0.0019 Adult retinal GGGGAAGGCG (13) 1.9 0.0019 ONL GGGAAGGCGG (11) 23 0.023 ONL ACCCGAGAGG (14) 5.7 0.0057 ONL GGGAAGGGGG (23) 1.9 0.0019 ONL GGGGAAGGGC (16) 1.9 0.0019