Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3444	Brd2	bromodomain containing 2	17	17 C (17 18.53 cM)	14312
Gene Ontology	cytoplasm | nucleus | nucleus | protein serine/threonine kinase activity | spermatogenesis
Human Homolog	BRD2[bromodomain containing 2]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 114 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAAATAAAGA (6) 26.1 0.0261 P8 Cb GC GGGAGGGAAG (3) 4.9 0.0049 P8 Cb GC TTAGACTCAA (2) 4.9 0.0049 P8 Cb GC AACAACTGGC (3) 3.3 0.0033 P8 Cb GC ACTTTTTTTT (9) 1.6 0.0016 P8 Cb GC GACCAAAATA (2) 1.6 0.0016 P8 Cb GC GGGAGGGAAA (8) 1.6 0.0016 P8 Cb GC GGGGAAGGAA (7) 1.6 0.0016 P8 Cb GC TAAATAAATA (5) 1.6 0.0016 Cb medulloblastoma TAAATAAAGA (6) 6.9 0.0069 Cb medulloblastoma TTAGACTCAA (2) 6.9 0.0069 Cb medulloblastoma GGGAGGGAAG (3) 4.6 0.0046 Cb medulloblastoma AACAACTGGC (3) 2.3 0.0023 Cb medulloblastoma ACTTTTTTTT (9) 2.3 0.0023 P8 GC+1d culture TAAATAAAGA (6) 25.1 0.0251 P8 GC+1d culture TTAGACTCAA (2) 4.6 0.0046 P8 GC+1d culture GGGAGGGAAG (3) 2.3 0.0023 P8 GC+1d culture ACTTTTTTTT (9) 1.1 0.0011 P8 GC+1d culture ATGCTGCGAA (2) 1.1 0.0011 P8 GC+1d culture GAAGCTGGAG (6) 1.1 0.0011 P8 GC+SHH+1d culture TAAATAAAGA (6) 18.7 0.0187 P8 GC+SHH+1d culture TTAGACTCAA (2) 4.7 0.0047 P8 GC+SHH+1d culture GAAGCTGGAG (6) 1.2 0.0012 P8 GC+SHH+1d culture GGGAGGGAAG (3) 1.2 0.0012 P8 GC+SHH+1d culture TAAAATAAAG 1.2 0.0012 P8 GC+SHH+1d culture TAAATAAATA (5) 1.2 0.0012 3T3 fibroblasts ATGCTGCGAA (2) 3.5 0.0035 E15 cortex GACCTCAGCA (10) 9.9 0.0099 E15 cortex CTGGAAAAAA (10) 4.9 0.0049 E15 cortex CTTGCACACA (2) 4.9 0.0049 E15 cortex GGGAGGGAAG (3) 4.9 0.0049 E15 cortex GGGGAAGGAA (7) 4.9 0.0049 P1 cortex TAAATAAAGA (6) 18.2 0.0182 P1 cortex GAAGCTGGAG (6) 9.1 0.0091 P1 cortex TTAGACTCAA (2) 4.5 0.0045 Hypothalamus GGGAGGGAAG (3) 10.9 0.0109 Hypothalamus TAAATAAAGA (6) 7.2 0.0072 Hypothalamus TAAATAAATA (5) 3.6 0.0036 Hypothalamus GACCTCAGCA (10) 1.8 0.0018 E12.5 retina TAAATAAAGA (6) 18.8 0.0188 E12.5 retina GGGAGGGAAG (3) 3.8 0.0038 E12.5 retina TTAGACTCAA (2) 3.8 0.0038 E12.5 retina CTGGAAAAAA (10) 1.9 0.0019 E12.5 retina GAAGCTGGAG (6) 1.9 0.0019 E14.5 retina TAAATAAAGA (6) 18.2 0.0182 E14.5 retina AACAACTGGC (3) 3.6 0.0036 E14.5 retina GAAGCTGGAG (6) 3.6 0.0036 E14.5 retina TTAGACTCAA (2) 3.6 0.0036 E14.5 retina CTTGCACACA (2) 1.8 0.0018 E14.5 retina GACCAAAATA (2) 1.8 0.0018 E14.5 retina GGGAGGGAAG (3) 1.8 0.0018 E14.5 retina TAAAATAAAG 1.8 0.0018 E14.5 retina TAAATAAATA (5) 1.8 0.0018 E16.5 retina TAAATAAAGA (6) 21.7 0.0217 E16.5 retina TTAGACTCAA (2) 5.4 0.0054 E16.5 retina GAAGCTGGAG (6) 1.8 0.0018 E16.5 retina GGGAGGGAAG (3) 1.8 0.0018 E16.5 retina GGGGAAGGAA (7) 1.8 0.0018 E16.5 retina TAAATAAATA (5) 1.8 0.0018 E18.5 retina TAAATAAAGA (6) 25.5 0.0255 E18.5 retina GGCTCAGCCT 5.5 0.0055 E18.5 retina TTAGACTCAA (2) 5.5 0.0055 E18.5 retina ATGCTGCGAA (2) 1.8 0.0018 E18.5 retina CTGGAAAAAA (10) 1.8 0.0018 E18.5 retina TAAAATAAAG 1.8 0.0018 E18.5 retina TAAATAAATA (5) 1.8 0.0018 P0.5 retina CTGGAAAAAA (10) 2 0.002 P0.5 retina GAAGCTGGAG (6) 2 0.002 P0.5 retina GGGAGGGAAG (3) 2 0.002 P0.5 retina TAAATAAAGA (6) 2 0.002 P2.5 retina TAAATAAAGA (6) 26.4 0.0264 P2.5 retina GGGAGGGAAG (3) 10.6 0.0106 P2.5 retina TTAGACTCAA (2) 10.6 0.0106 P2.5 retina AACAACTGGC (3) 5.3 0.0053 P2.5 retina GGGAGGGAAA (8) 1.8 0.0018 P2.5 retina TAAAATAAAG 1.8 0.0018 P2.5 retina TAAATAAATA (5) 1.8 0.0018 P4.5 retina TAAATAAAGA (6) 47.6 0.0476 P4.5 retina GGGAGGGAAG (3) 4 0.004 P4.5 retina AACAACTGGC (3) 2 0.002 P4.5 retina CTGGAAAAAA (10) 2 0.002 P4.5 retina GAAGCTGGAG (6) 2 0.002 P4.5 retina TTAGACTCAA (2) 2 0.002 P6.5 retina TAAATAAAGA (6) 36.7 0.0367 P6.5 retina GGGAGGGAAG (3) 3.3 0.0033 P6.5 retina TTAGACTCAA (2) 3.3 0.0033 P6.5 retina AACAACTGGC (3) 1.7 0.0017 P6.5 retina GGGGAAGGAA (7) 1.7 0.0017 P6.5 retina TAAATAAATA (5) 1.7 0.0017 P10.5 crx- retina TAAATAAAGA (6) 9.3 0.0093 P10.5 crx- retina TTAGACTCAA (2) 5.6 0.0056 P10.5 crx- retina GGGAGGGAAG (3) 3.7 0.0037 P10.5 crx- retina GAAGCTGGAG (6) 1.9 0.0019 P10.5 crx- retina GGGGAAGGAA (7) 1.9 0.0019 P10.5 crx- retina TAAATAAATA (5) 1.9 0.0019 P10.5 crx+ retina GGGAGGGAAG (3) 5.8 0.0058 P10.5 crx+ retina TTAGACTCAA (2) 5.8 0.0058 P10.5 crx+ retina TAAATAAAGA (6) 3.8 0.0038 P10.5 crx+ retina AACAACTGGC (3) 1.9 0.0019 P10.5 crx+ retina CTTGCACACA (2) 1.9 0.0019 P10.5 crx+ retina GAAGCTGGAG (6) 1.9 0.0019 P10.5 crx+ retina GGGAGGGAAA (8) 1.9 0.0019 P10.5 crx+ retina TAAATAAATA (5) 1.9 0.0019 Adult retinal AACAACTGGC (3) 1.9 0.0019 Adult retinal ATGCTGCGAA (2) 1.9 0.0019 Adult retinal GAAGCTGGAG (6) 1.9 0.0019 Adult retinal GACCAAAATA (2) 1.9 0.0019 Adult retinal TAAATAAAGA (6) 1.9 0.0019 ONL TAAATAAAGA (6) 13.4 0.0134 ONL GGGAGGGAAG (3) 7.7 0.0077 ONL TTAGACTCAA (2) 7.7 0.0077 ONL TAAATAAATA (5) 3.8 0.0038 ONL ACTTTTTTTT (9) 1.9 0.0019 ONL CTGGAAAAAA (10) 1.9 0.0019