Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.3705	P4ha2	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	11	11 29.2 cM	18452
Gene Ontology	endoplasmic reticulum | extracellular space | oxidoreductase activity | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | peptidyl-proline hydroxylation to 4-hydroxy-L-proline | procollagen-proline 4-dioxygenase activity | procollagen-proline 4-dioxygenase activity | protein binding | protein metabolism
Human Homolog	P4HA2[procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 31 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTGAGTGTGG (2) 1.6 0.0016 P8 Cb GC CTGGGGAAGA (7) 1.6 0.0016 P8 GC+1d culture CTGAGTGTGG (2) 3.4 0.0034 P8 GC+SHH+1d culture CTGAGTGTGG (2) 2.3 0.0023 3T3 fibroblasts TGTGTTTTTA (3) 3.5 0.0035 Hypothalamus CTGAGTGTGG (2) 3.6 0.0036 Hypothalamus TGTGTTTTTA (3) 3.6 0.0036 Hypothalamus GAGCAGTTTT (3) 1.8 0.0018 E12.5 retina GAGCAGTTTT (3) 1.9 0.0019 E12.5 retina TGTGTTTTTA (3) 1.9 0.0019 E14.5 retina CTGAGTGTGG (2) 1.8 0.0018 E14.5 retina TGTGTTTTTA (3) 1.8 0.0018 E16.5 retina GAGCAGTTTT (3) 3.6 0.0036 E16.5 retina TGTGTTTTTA (3) 3.6 0.0036 E18.5 retina CTGAGTGTGG (2) 1.8 0.0018 P0.5 retina CTGAGTGTGG (2) 3.9 0.0039 P0.5 retina CTGGGGAAGA (7) 2 0.002 P4.5 retina CTGAGTGTGG (2) 5.9 0.0059 P4.5 retina TGTGTTTTTA (3) 4 0.004 P6.5 retina TGTGTTTTTA (3) 3.3 0.0033 P6.5 retina CTGAGTGTGG (2) 1.7 0.0017 P10.5 crx- retina GAGCAGTTTT (3) 3.7 0.0037 P10.5 crx- retina TGTGTTTTTA (3) 3.7 0.0037 P10.5 crx- retina CTGAGTGTGG (2) 1.9 0.0019 P10.5 crx+ retina GAGCAGTTTT (3) 3.8 0.0038 P10.5 crx+ retina CTGAGTGTGG (2) 1.9 0.0019 Adult retinal CTGAGTGTGG (2) 9.3 0.0093 Adult retinal CTGGGGAAGA (7) 3.7 0.0037 Adult retinal TGTGTTTTTA (3) 1.9 0.0019 ONL CTGAGTGTGG (2) 1.9 0.0019 ONL TGTGTTTTTA (3) 1.9 0.0019