Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.40120	4121402D02Rik	RIKEN cDNA 4121402D02 gene	11		74026
Mm.40120	Casc3	cancer susceptibility candidate 3	11		192160
Gene Ontology	cytoplasm | mRNA localization, intracellular | mRNA processing | mRNA-nucleus export | nucleus | protein binding | protein self binding | ribonucleoprotein complex | transport
Human Homolog	CASC3[cancer susceptibility candidate 3]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 81 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC CTAATAAAGC (6) 143.6 0.1436 P8 Cb GC GGAGCAGGAC (5) 11.4 0.0114 P8 Cb GC TGTGTTGTTT (4) 9.8 0.0098 P8 Cb GC GGAGCAGGAA (4) 1.6 0.0016 P8 Cb GC GGGATGTAGT (3) 1.6 0.0016 P8 Cb GC TGAAAAAGAA (6) 1.6 0.0016 Cb medulloblastoma CTAATAAAGC (6) 78.6 0.0786 Cb medulloblastoma GGAGCAGGAC (5) 48.6 0.0486 Cb medulloblastoma TGTGTTGTTT (4) 4.6 0.0046 Cb medulloblastoma TGTGTTGGTT (2) 2.3 0.0023 P8 GC+1d culture CTAATAAAGC (6) 135.8 0.1358 P8 GC+1d culture GGAGCAGGAC (5) 10.3 0.0103 P8 GC+1d culture TGTGTTGTTT (4) 4.6 0.0046 P8 GC+1d culture CCTTCCCTGC (5) 1.1 0.0011 P8 GC+SHH+1d culture CTAATAAAGC (6) 165.1 0.1651 P8 GC+SHH+1d culture TGTGTTGTTT (4) 10.5 0.0105 P8 GC+SHH+1d culture GGAGCAGGAC (5) 5.9 0.0059 P8 GC+SHH+1d culture TGAAAAAGAA (6) 2.3 0.0023 P8 GC+SHH+1d culture CCTTCCCTGC (5) 1.2 0.0012 P8 GC+SHH+1d culture GAGAAGTACT (6) 1.2 0.0012 3T3 fibroblasts CTAATAAAGC (6) 63.1 0.0631 E15 cortex CTAATAAAGC (6) 24.7 0.0247 E15 cortex GGAGCAGGAC (5) 9.9 0.0099 E15 cortex TGTGTTGTTT (4) 4.9 0.0049 P1 cortex CTAATAAAGC (6) 63.6 0.0636 P1 cortex TGTGTTGTTT (4) 9.1 0.0091 P1 cortex GGAGCAGGAC (5) 4.5 0.0045 P1 cortex TGTGTGTTTT (2) 4.5 0.0045 Hypothalamus CTAATAAAGC (6) 121.4 0.1214 Hypothalamus GGAGCAGGAC (5) 34.4 0.0344 Hypothalamus TGTGTTGTTT (4) 5.4 0.0054 Hypothalamus CTGCCCACAG (8) 1.8 0.0018 Hypothalamus GAGAAGTACT (6) 1.8 0.0018 E12.5 retina CTAATAAAGC (6) 244.1 0.2441 E12.5 retina GGAGCAGGAC (5) 3.8 0.0038 E12.5 retina TGTGTTGTTT (4) 3.8 0.0038 E12.5 retina GGAGCAGGAA (4) 1.9 0.0019 E12.5 retina GGGATGTAGT (3) 1.9 0.0019 E12.5 retina TGAAAAAGAA (6) 1.9 0.0019 E14.5 retina CTAATAAAGC (6) 136.6 0.1366 E14.5 retina GGAGCAGGAC (5) 3.6 0.0036 E14.5 retina TGTGTTGTTT (4) 3.6 0.0036 E14.5 retina GAGAAGTACT (6) 1.8 0.0018 E16.5 retina CTAATAAAGC (6) 186.6 0.1866 E16.5 retina GGAGCAGGAC (5) 3.6 0.0036 E16.5 retina TGTGTTGTTT (4) 3.6 0.0036 E16.5 retina CTGCCCACAG (8) 1.8 0.0018 E16.5 retina GGGATGTAGT (3) 1.8 0.0018 E18.5 retina CTAATAAAGC (6) 296.5 0.2965 E18.5 retina GGAGCAGGAC (5) 5.5 0.0055 E18.5 retina TGTGTTGTTT (4) 3.6 0.0036 E18.5 retina TGTGTTGGTT (2) 1.8 0.0018 P0.5 retina CTAATAAAGC (6) 135.4 0.1354 P0.5 retina GGAGCAGGAC (5) 11.8 0.0118 P0.5 retina TGTGTTGTTT (4) 5.9 0.0059 P2.5 retina CTAATAAAGC (6) 190.1 0.1901 P2.5 retina GGAGCAGGAC (5) 19.4 0.0194 P2.5 retina TGTGTTGTTT (4) 8.8 0.0088 P4.5 retina CTAATAAAGC (6) 160.5 0.1605 P4.5 retina TGTGTTGTTT (4) 11.9 0.0119 P4.5 retina GGAGCAGGAC (5) 9.9 0.0099 P6.5 retina CTAATAAAGC (6) 123.4 0.1234 P6.5 retina GGAGCAGGAC (5) 31.7 0.0317 P6.5 retina TGTGTTGTTT (4) 13.3 0.0133 P6.5 retina GGAGCAGGAA (4) 3.3 0.0033 P6.5 retina CCTTCCCTGC (5) 1.7 0.0017 P10.5 crx- retina CTAATAAAGC (6) 74.3 0.0743 P10.5 crx- retina GGAGCAGGAC (5) 35.3 0.0353 P10.5 crx- retina TGTGTTGTTT (4) 9.3 0.0093 P10.5 crx- retina CTGCCCACAG (8) 1.9 0.0019 P10.5 crx+ retina CTAATAAAGC (6) 94.2 0.0942 P10.5 crx+ retina GGAGCAGGAC (5) 17.3 0.0173 P10.5 crx+ retina TGTGTTGTTT (4) 5.8 0.0058 P10.5 crx+ retina TGTGTTGGTT (2) 1.9 0.0019 Adult retinal CTAATAAAGC (6) 40.7 0.0407 Adult retinal GGAGCAGGAC (5) 5.6 0.0056 ONL CTAATAAAGC (6) 34.5 0.0345 ONL GGAGCAGGAC (5) 7.7 0.0077 ONL TGTGTGTTTT (2) 3.8 0.0038 ONL TGTGTTGGTT (2) 1.9 0.0019 ONL TGTGTTGTTT (4) 1.9 0.0019