Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.40828	AI845619	expressed sequence AI845619	11		103846
Mm.40828	Sqstm1	sequestosome 1	11		18412
Gene Ontology	transcription cofactor activity
Human Homolog	SQSTM1[sequestosome 1] | SQSTM1[sequestosome 1]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 82 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC TAGCTTCCTC (5) 26.1 0.0261 P8 Cb GC GTGCTGGAGA (13) 3.3 0.0033 Cb medulloblastoma TAGCTTCCTC (5) 53.2 0.0532 Cb medulloblastoma GAACACTTTT (8) 2.3 0.0023 Cb medulloblastoma GGAGGGGAAA (4) 2.3 0.0023 P8 GC+1d culture TAGCTTCCTC (5) 99.3 0.0993 P8 GC+1d culture AATTCTCCAT (7) 2.3 0.0023 P8 GC+1d culture GCGGGCGGGC (5) 2.3 0.0023 P8 GC+1d culture GGAGGGAAGA (5) 2.3 0.0023 P8 GC+1d culture GTGCTGGAGA (13) 1.1 0.0011 P8 GC+SHH+1d culture TAGCTTCCTC (5) 57.4 0.0574 P8 GC+SHH+1d culture GGAGGGAAGA (5) 4.7 0.0047 P8 GC+SHH+1d culture GCGGGCGGGC (5) 3.5 0.0035 P8 GC+SHH+1d culture AGGAGAGTTT (5) 2.3 0.0023 P8 GC+SHH+1d culture GAGGGAAGAG (7) 1.2 0.0012 P8 GC+SHH+1d culture TCTATTTCTG (6) 1.2 0.0012 3T3 fibroblasts TAGCTTCCTC (5) 10.5 0.0105 3T3 fibroblasts GCGGGCGGGC (5) 3.5 0.0035 3T3 fibroblasts GGAGGGAAGA (5) 3.5 0.0035 E15 cortex TAGCTTCCTC (5) 9.9 0.0099 E15 cortex GTGCTGGAGA (13) 4.9 0.0049 P1 cortex TAGCTTCCTC (5) 22.7 0.0227 P1 cortex GAACACTTTT (8) 9.1 0.0091 P1 cortex GGAGGGAAGA (5) 9.1 0.0091 Hypothalamus TAGCTTCCTC (5) 67 0.067 Hypothalamus AATTCTCCAT (7) 1.8 0.0018 Hypothalamus GAACACTTTT (8) 1.8 0.0018 Hypothalamus GCGGGCGGGC (5) 1.8 0.0018 Hypothalamus GGAGGGAAGA (5) 1.8 0.0018 E12.5 retina TAGCTTCCTC (5) 9.4 0.0094 E12.5 retina GGAGGGAAGA (5) 7.5 0.0075 E12.5 retina AGGAGAGTTT (5) 1.9 0.0019 E12.5 retina GAGGGAAGAA (8) 1.9 0.0019 E14.5 retina TAGCTTCCTC (5) 12.8 0.0128 E14.5 retina GGAGGGAAGA (5) 7.3 0.0073 E14.5 retina GATGTTAGAT (3) 1.8 0.0018 E14.5 retina GCGGGCGGGC (5) 1.8 0.0018 E14.5 retina GTGCTGGAGA (13) 1.8 0.0018 E16.5 retina TAGCTTCCTC (5) 16.3 0.0163 E16.5 retina GCGGGCGGGC (5) 9.1 0.0091 E16.5 retina GGAGGGAAGA (5) 3.6 0.0036 E16.5 retina GAACACTTTT (8) 1.8 0.0018 E16.5 retina GATGTTAGAT (3) 1.8 0.0018 E18.5 retina TAGCTTCCTC (5) 25.5 0.0255 E18.5 retina GGAGGGAAGA (5) 7.3 0.0073 E18.5 retina GAGGGAAGAA (8) 1.8 0.0018 E18.5 retina GCGGGCGGGC (5) 1.8 0.0018 P0.5 retina TAGCTTCCTC (5) 23.6 0.0236 P0.5 retina GGAGGGAAGA (5) 3.9 0.0039 P0.5 retina GAACACTTTT (8) 2 0.002 P0.5 retina GAGGGAAGAG (7) 2 0.002 P2.5 retina TAGCTTCCTC (5) 31.7 0.0317 P2.5 retina GGAGGGAAGA (5) 8.8 0.0088 P2.5 retina GCGGGCGGGC (5) 1.8 0.0018 P2.5 retina GTGCTGGAGA (13) 1.8 0.0018 P4.5 retina TAGCTTCCTC (5) 45.6 0.0456 P4.5 retina GGAGGGAAGA (5) 9.9 0.0099 P4.5 retina GCGGGCGGGC (5) 4 0.004 P4.5 retina GAGGGAAGAA (8) 2 0.002 P4.5 retina GAGGGAAGAG (7) 2 0.002 P4.5 retina GATGTTAGAT (3) 2 0.002 P4.5 retina GTGCTGGAGA (13) 2 0.002 P6.5 retina TAGCTTCCTC (5) 35 0.035 P6.5 retina GGAGGGAAGA (5) 10 0.01 P10.5 crx- retina TAGCTTCCTC (5) 46.4 0.0464 P10.5 crx- retina GCGGGCGGGC (5) 7.4 0.0074 P10.5 crx- retina GGAGGGAAGA (5) 7.4 0.0074 P10.5 crx- retina GAACACTTTT (8) 5.6 0.0056 P10.5 crx- retina AGGAGAGTTT (5) 1.9 0.0019 P10.5 crx- retina GAGGGAAGAG (7) 1.9 0.0019 P10.5 crx- retina GTGCTGGAGA (13) 1.9 0.0019 P10.5 crx+ retina TAGCTTCCTC (5) 15.4 0.0154 P10.5 crx+ retina GGAGGGAAGA (5) 3.8 0.0038 P10.5 crx+ retina GAACACTTTT (8) 1.9 0.0019 P10.5 crx+ retina GGAGGGGAAA (4) 1.9 0.0019 P10.5 crx+ retina TCTATTTCTG (6) 1.9 0.0019 Adult retinal TAGCTTCCTC (5) 25.9 0.0259 Adult retinal AGGAGAGTTT (5) 1.9 0.0019 Adult retinal GGAGGGAAGA (5) 1.9 0.0019 Adult retinal GTGCTGGAGA (13) 1.9 0.0019 ONL TAGCTTCCTC (5) 21.1 0.0211 ONL GTGCTGGAGA (13) 5.7 0.0057