Mouse Retina SAGE Library

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Gene:              Accession:     e.g., Rho or Rhodopsin e.g., BG297543 batch search Tag:        Cytoband (Mm):     e.g., CCCAGTTCAC e.g., 6 E3 Unigene:        Cytoband (Hs):     e.g., Mm.2965 batch search e.g., 3q21-q24

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UniGene	Symbol	Name	Chr	Cytoband	LocusLink
Mm.41746	Rpo2tc1	RNA polymerase II transcriptional coactivator	15		20024
Gene Ontology	DNA binding | nucleus | regulation of transcription, DNA-dependent | transcription | transcription coactivator activity
Human Homolog	PC4[activated RNA polymerase II transcription cofactor 4]
Clusters	All Libraries - Raw DataAll Libraries - NormalizedComplete Retina - Raw DataComplete Retina - NormalizedEarly Retina - Raw DataEarly Retina - NormalizedLate Retina - Raw DataLate Retina - Normalized   Neighbors

No In Situ Hybridization images could be found.



SAGE Tags

Total 104 tags found with positive counts.

all tags     reliable tags     sum by library with all tags     sum by library with reliable tags    Library   Tag (Other Genes)   Normalized Count   % in library  P8 Cb GC GAACAATGGA (3) 11.4 0.0114 P8 Cb GC TTCCAGATTG (5) 6.5 0.0065 P8 Cb GC CATCTAGTGA 4.9 0.0049 P8 Cb GC TTTTTTTTTT (433) 4.9 0.0049 P8 Cb GC TAACTCTTTA (2) 1.6 0.0016 P8 Cb GC TTGTCATCTC (2) 1.6 0.0016 Cb medulloblastoma CATCTAGTGA 2.3 0.0023 Cb medulloblastoma GGCTTTGGTT (3) 2.3 0.0023 Cb medulloblastoma TTTTTTTTTT (433) 2.3 0.0023 P8 GC+1d culture TTTTTTTTTT (433) 13.7 0.0137 P8 GC+1d culture GAACAATGGA (3) 12.6 0.0126 P8 GC+1d culture TTCCAGATTG (5) 10.3 0.0103 P8 GC+1d culture CATCTAGTGA 4.6 0.0046 P8 GC+1d culture TATATAATGT (4) 3.4 0.0034 P8 GC+1d culture TTGTCATCTC (2) 2.3 0.0023 P8 GC+1d culture GCATCCTAAG (3) 1.1 0.0011 P8 GC+SHH+1d culture GAACAATGGA (3) 18.7 0.0187 P8 GC+SHH+1d culture TTTTTTTTTT (433) 5.9 0.0059 P8 GC+SHH+1d culture TTGTCATCTC (2) 4.7 0.0047 P8 GC+SHH+1d culture TTCCAGATTG (5) 2.3 0.0023 P8 GC+SHH+1d culture TAACTCTTTA (2) 1.2 0.0012 P8 GC+SHH+1d culture TTTAAAGAAA (9) 1.2 0.0012 3T3 fibroblasts CATCTAGTGA 3.5 0.0035 3T3 fibroblasts GAACAATGGA (3) 3.5 0.0035 E15 cortex GAACAATGGA (3) 19.8 0.0198 E15 cortex TTTTTTTTTT (433) 4.9 0.0049 P1 cortex GAAACCAATG (8) 4.5 0.0045 P1 cortex GAACAATGGA (3) 4.5 0.0045 P1 cortex TTTAAAGAAA (9) 4.5 0.0045 P1 cortex TTTTTTTTTT (433) 4.5 0.0045 Hypothalamus GAACAATGGA (3) 14.5 0.0145 Hypothalamus TGGAAAGCTT (4) 9.1 0.0091 Hypothalamus TTTTTTTTTT (433) 7.2 0.0072 Hypothalamus TTCCAGATTG (5) 5.4 0.0054 Hypothalamus TTGTCATCTC (2) 3.6 0.0036 Hypothalamus CATCTAGTGA 1.8 0.0018 Hypothalamus TTTACATTAT 1.8 0.0018 E12.5 retina GAACAATGGA (3) 41.3 0.0413 E12.5 retina TTTTTTTTTT (433) 7.5 0.0075 E12.5 retina TTGTCATCTC (2) 1.9 0.0019 E12.5 retina TTTAAAGAAA (9) 1.9 0.0019 E14.5 retina TTTTTTTTTT (433) 23.7 0.0237 E14.5 retina GAACAATGGA (3) 12.8 0.0128 E14.5 retina CATCTAGTGA 3.6 0.0036 E14.5 retina TTTAAAGAAA (9) 3.6 0.0036 E14.5 retina GCATCCTAAG (3) 1.8 0.0018 E16.5 retina GAACAATGGA (3) 34.4 0.0344 E16.5 retina TTCCAGATTG (5) 14.5 0.0145 E16.5 retina CATCTAGTGA 5.4 0.0054 E16.5 retina TTTTTTTTTT (433) 5.4 0.0054 E16.5 retina TTGTCATCTC (2) 1.8 0.0018 E16.5 retina TTTAAAGAAA (9) 1.8 0.0018 E18.5 retina GAACAATGGA (3) 16.4 0.0164 E18.5 retina TTTTTTTTTT (433) 10.9 0.0109 E18.5 retina CATCTAGTGA 5.5 0.0055 E18.5 retina GCTTTTGTTT (4) 1.8 0.0018 E18.5 retina TTCCAGATTG (5) 1.8 0.0018 E18.5 retina TTGTCATCTC (2) 1.8 0.0018 P0.5 retina GAACAATGGA (3) 25.5 0.0255 P0.5 retina TTTTTTTTTT (433) 9.8 0.0098 P0.5 retina TTGTCATCTC (2) 3.9 0.0039 P0.5 retina CATCTAGTGA 2 0.002 P0.5 retina GCATCCTAAG (3) 2 0.002 P0.5 retina TTCCAGATTG (5) 2 0.002 P0.5 retina TTTAAAGAAA (9) 2 0.002 P2.5 retina GAACAATGGA (3) 8.8 0.0088 P2.5 retina TTTTTTTTTT (433) 7 0.007 P2.5 retina TTCCAGATTG (5) 3.5 0.0035 P2.5 retina GCTTTTGTTT (4) 1.8 0.0018 P2.5 retina TAACTCTTTA (2) 1.8 0.0018 P4.5 retina GAACAATGGA (3) 9.9 0.0099 P4.5 retina TTTTTTTTTT (433) 9.9 0.0099 P4.5 retina CATCTAGTGA 4 0.004 P4.5 retina GAAACCAATG (8) 2 0.002 P6.5 retina GAACAATGGA (3) 10 0.01 P6.5 retina TTCCAGATTG (5) 8.3 0.0083 P6.5 retina TTTTTTTTTT (433) 8.3 0.0083 P6.5 retina CATCTAGTGA 1.7 0.0017 P6.5 retina TTGTCATCTC (2) 1.7 0.0017 P6.5 retina TTTACATTAT 1.7 0.0017 P10.5 crx- retina GAACAATGGA (3) 24.2 0.0242 P10.5 crx- retina TTCCAGATTG (5) 5.6 0.0056 P10.5 crx- retina CATCTAGTGA 3.7 0.0037 P10.5 crx- retina GGCTTTGGTT (3) 1.9 0.0019 P10.5 crx- retina TTTACATTAT 1.9 0.0019 P10.5 crx+ retina TTCCAGATTG (5) 7.7 0.0077 P10.5 crx+ retina GAACAATGGA (3) 5.8 0.0058 P10.5 crx+ retina CATCTAGTGA 3.8 0.0038 P10.5 crx+ retina GGCTTTGGTT (3) 3.8 0.0038 P10.5 crx+ retina TTTTTTTTTT (433) 3.8 0.0038 P10.5 crx+ retina GAAACCAATG (8) 1.9 0.0019 P10.5 crx+ retina GCATCCTAAG (3) 1.9 0.0019 P10.5 crx+ retina TTGTCATCTC (2) 1.9 0.0019 Adult retinal TTTTTTTTTT (433) 7.4 0.0074 Adult retinal GAACAATGGA (3) 5.6 0.0056 Adult retinal CATCTAGTGA 1.9 0.0019 Adult retinal TGGAAAGCTT (4) 1.9 0.0019 Adult retinal TTTAAAGAAA (9) 1.9 0.0019 ONL GAACAATGGA (3) 3.8 0.0038 ONL TTTTTTTTTT (433) 3.8 0.0038 ONL GCATCCTAAG (3) 1.9 0.0019 ONL GCTTTTGTTT (4) 1.9 0.0019 ONL GGCTTTGGTT (3) 1.9 0.0019 ONL TTTAAAGAAA (9) 1.9 0.0019